Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution

Por Wolf Yuri I, Galperin Michael Y, Omelchenko Marina V, Koonin Eugene V
Publicado em 2010-04-01

Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution

Por Omelchenko, Marina V, Galperin, Michael Y, Wolf, Yuri I, Koonin, Eugene V
Publicado em 2010

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ

Por Omelchenko, Marina V, Makarova, Kira S, Wolf, Yuri I, Rogozin, Igor B, Koonin, Eugene V
Publicado em 2003

Genome-Wide Molecular Clock and Horizontal Gene Transfer in Bacterial Evolution

Por Novichkov, Pavel S., Omelchenko, Marina V., Gelfand, Mikhail S., Mironov, Andrei A., Wolf, Yuri I., Koonin, Eugene V.
Publicado em 2004

Bioinformatics and functional analysis define four distinct groups of AlkB DNA-dioxygenases in bacteria

Por van den Born, Erwin, Bekkelund, Anders, Moen, Marivi N., Omelchenko, Marina V., Klungland, Arne, Falnes, Pål Ø.
Publicado em 2009

Viral AlkB proteins repair RNA damage by oxidative demethylation

Por van den Born, Erwin, Omelchenko, Marina V., Bekkelund, Anders, Leihne, Vibeke, Koonin, Eugene V., Dolja, Valerian V., Falnes, Pål Ø.
Publicado em 2008

Transcriptome Analysis Applied to Survival of Shewanella oneidensis MR-1 Exposed to Ionizing Radiation

Por Qiu, Xiaoyun, Daly, Michael J., Vasilenko, Alexander, Omelchenko, Marina V., Gaidamakova, Elena K., Wu, Liyou, Zhou, Jizhong, Sundin, George W., Tiedje, James M.
Publicado em 2006

Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance

Por Omelchenko, Marina V, Wolf, Yuri I, Gaidamakova, Elena K, Matrosova, Vera Y, Vasilenko, Alexander, Zhai, Min, Daly, Michael J, Koonin, Eugene V, Makarova, Kira S
Publicado em 2005

Evolution of AANAT: expansion of the gene family in the cephalochordate amphioxus

Por Pavlicek, Jiri, Sauzet, Sandrine, Besseau, Laurence, Coon, Steven L, Weller, Joan L, Boeuf, Gilles, Gaildrat, Pascaline, Omelchenko, Marina V, Koonin, Eugene V, Falcón, Jack, Klein, David C
Publicado em 2010

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation

Por Liu, Yongqing, Zhou, Jizhong, Omelchenko, Marina V., Beliaev, Alex S., Venkateswaran, Amudhan, Stair, Julia, Wu, Liyou, Thompson, Dorothea K., Xu, Dong, Rogozin, Igor B., Gaidamakova, Elena K., Zhai, Min, Makarova, Kira S., Koonin, Eugene V., Daly, Michael J.
Publicado em 2003

Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1

Por Saw, Jimmy H, Mountain, Bruce W, Feng, Lu, Omelchenko, Marina V, Hou, Shaobin, Saito, Jennifer A, Stott, Matthew B, Li, Dan, Zhao, Guang, Wu, Junli, Galperin, Michael Y, Koonin, Eugene V, Makarova, Kira S, Wolf, Yuri I, Rigden, Daniel J, Dunfield, Peter F, Wang, Lei, Alam, Maqsudul
Publicado em 2008

Genome Sequence and Comparative Analysis of the Solvent-Producing Bacterium Clostridium acetobutylicum

Por Nölling, Jörk, Breton, Gary, Omelchenko, Marina V., Makarova, Kira S., Zeng, Qiandong, Gibson, Rene, Lee, Hong Mei, Dubois, JoAnn, Qiu, Dayong, Hitti, Joseph, Wolf, Yuri I., Tatusov, Roman L., Sabathe, Fabrice, Doucette-Stamm, Lynn, Soucaille, Philippe, Daly, Michael J., Bennett, George N., Koonin, Eugene V., Smith, Douglas R.
Publicado em 2001

Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia

Por Hou, Shaobin, Makarova, Kira S, Saw, Jimmy HW, Senin, Pavel, Ly, Benjamin V, Zhou, Zhemin, Ren, Yan, Wang, Jianmei, Galperin, Michael Y, Omelchenko, Marina V, Wolf, Yuri I, Yutin, Natalya, Koonin, Eugene V, Stott, Matthew B, Mountain, Bruce W, Crowe, Michelle A, Smirnova, Angela V, Dunfield, Peter F, Feng, Lu, Wang, Lei, Alam, Maqsudul
Publicado em 2008

Genome sequence of the deep-sea γ-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy

Por Hou, Shaobin, Saw, Jimmy H., Lee, Kit Shan, Freitas, Tracey A., Belisle, Claude, Kawarabayasi, Yutaka, Donachie, Stuart P., Pikina, Alla, Galperin, Michael Y., Koonin, Eugene V., Makarova, Kira S., Omelchenko, Marina V., Sorokin, Alexander, Wolf, Yuri I., Li, Qing X., Keum, Young Soo, Campbell, Sonia, Denery, Judith, Aizawa, Shin-Ichi, Shibata, Satoshi, Malahoff, Alexander, Alam, Maqsudul
Publicado em 2004

Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks

Por Makarova, Kira S., Omelchenko, Marina V., Gaidamakova, Elena K., Matrosova, Vera Y., Vasilenko, Alexander, Zhai, Min, Lapidus, Alla, Copeland, Alex, Kim, Edwin, Land, Miriam, Mavromatis, Konstantinos, Pitluck, Samuel, Richardson, Paul M., Detter, Chris, Brettin, Thomas, Saunders, Elizabeth, Lai, Barry, Ravel, Bruce, Kemner, Kenneth M., Wolf, Yuri I., Sorokin, Alexander, Gerasimova, Anna V., Gelfand, Mikhail S., Fredrickson, James K., Koonin, Eugene V., Daly, Michael J.
Publicado em 2007

CDD: a Conserved Domain Database for the functional annotation of proteins

Por Marchler-Bauer, Aron, Lu, Shennan, Anderson, John B., Chitsaz, Farideh, Derbyshire, Myra K., DeWeese-Scott, Carol, Fong, Jessica H., Geer, Lewis Y., Geer, Renata C., Gonzales, Noreen R., Gwadz, Marc, Hurwitz, David I., Jackson, John D., Ke, Zhaoxi, Lanczycki, Christopher J., Lu, Fu, Marchler, Gabriele H., Mullokandov, Mikhail, Omelchenko, Marina V., Robertson, Cynthia L., Song, James S., Thanki, Narmada, Yamashita, Roxanne A., Zhang, Dachuan, Zhang, Naigong, Zheng, Chanjuan, Bryant, Stephen H.
Publicado em 2011