Analysis and prediction of functionally important sites in proteins

Por Chakrabarti, Saikat, Lanczycki, Christopher J.
Publicado em 2007

A tool for the prediction of functionally important sites in proteins using a library of functional templates

Por Lanczycki, Christopher J, Chakrabarti, Saikat
Publicado em 2008

Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures

Por Neuwald, Andrew F, Lanczycki, Christopher J, Marchler-Bauer, Aron
Publicado em 2012

Prediction of functionally important sites from protein sequences using sparse kernel least squares classifiers

Por Tang, Ke, Pugalenthi, Ganesan, Suganthan, P.N., Lanczycki, Christopher J., Chakrabarti, Saikat
Publicado em 2009

Annotation of functional sites with the Conserved Domain Database

Por Derbyshire, Myra K., Lanczycki, Christopher J., Bryant, Stephen H., Marchler-Bauer, Aron
Publicado em 2012

SPEER-SERVER: a web server for prediction of protein specificity determining sites

Por Chakraborty, Abhijit, Mandloi, Sapan, Lanczycki, Christopher J., Panchenko, Anna R., Chakrabarti, Saikat
Publicado em 2012

Refining multiple sequence alignments with conserved core regions

Por Chakrabarti, Saikat, Lanczycki, Christopher J., Panchenko, Anna R., Przytycka, Teresa M., Thiessen, Paul A., Bryant, Stephen H.
Publicado em 2006

State of the art: refinement of multiple sequence alignments

Por Chakrabarti, Saikat, Lanczycki, Christopher J, Panchenko, Anna R, Przytycka, Teresa M, Thiessen, Paul A, Bryant, Stephen H
Publicado em 2006

State of the art: refinement of multiple sequence alignments

Por Chakrabarti, Saikat, Lanczycki, Christopher J, Panchenko, Anna R, Przytycka, Teresa M, Thiessen, Paul A, Bryant, Stephen H
Publicado em 2010

MMDB and VAST+: tracking structural similarities between macromolecular complexes

Por Madej, Thomas, Lanczycki, Christopher J., Zhang, Dachuan, Thiessen, Paul A., Geer, Renata C., Marchler-Bauer, Aron, Bryant, Stephen H.
Publicado em 2014

MMDB: 3D structures and macromolecular interactions

Por Madej, Thomas, Addess, Kenneth J., Fong, Jessica H., Geer, Lewis Y., Geer, Renata C., Lanczycki, Christopher J., Liu, Chunlei, Lu, Shennan, Marchler-Bauer, Aron, Panchenko, Anna R., Chen, Jie, Thiessen, Paul A., Wang, Yanli, Zhang, Dachuan, Bryant, Stephen H.
Publicado em 2012

CDD: conserved domains and protein three-dimensional structure

Por Marchler-Bauer, Aron, Zheng, Chanjuan, Chitsaz, Farideh, Derbyshire, Myra K., Geer, Lewis Y., Geer, Renata C., Gonzales, Noreen R., Gwadz, Marc, Hurwitz, David I., Lanczycki, Christopher J., Lu, Fu, Lu, Shennan, Marchler, Gabriele H., Song, James S., Thanki, Narmada, Yamashita, Roxanne A., Zhang, Dachuan, Bryant, Stephen H.
Publicado em 2013

CDD: NCBI's conserved domain database

Por Marchler-Bauer, Aron, Derbyshire, Myra K., Gonzales, Noreen R., Lu, Shennan, Chitsaz, Farideh, Geer, Lewis Y., Geer, Renata C., He, Jane, Gwadz, Marc, Hurwitz, David I., Lanczycki, Christopher J., Lu, Fu, Marchler, Gabriele H., Song, James S., Thanki, Narmada, Wang, Zhouxi, Yamashita, Roxanne A., Zhang, Dachuan, Zheng, Chanjuan, Bryant, Stephen H.
Publicado no Nucleic Acids Res (2014)

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

Por Marchler-Bauer, Aron, Bo, Yu, Han, Lianyi, He, Jane, Lanczycki, Christopher J., Lu, Shennan, Chitsaz, Farideh, Derbyshire, Myra K., Geer, Renata C., Gonzales, Noreen R., Gwadz, Marc, Hurwitz, David I., Lu, Fu, Marchler, Gabriele H., Song, James S., Thanki, Narmada, Wang, Zhouxi, Yamashita, Roxanne A., Zhang, Dachuan, Zheng, Chanjuan, Geer, Lewis Y., Bryant, Stephen H.
Publicado no Nucleic Acids Res (2017)

CDD: a Conserved Domain Database for protein classification

Por Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, He, Siqian, Hurwitz, David I., Jackson, John D., Ke, Zhaoxi, Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Lu, Fu, Marchler, Gabriele H., Mullokandov, Mikhail, Shoemaker, Benjamin A., Simonyan, Vahan, Song, James S., Thiessen, Paul A., Yamashita, Roxanne A., Yin, Jodie J., Zhang, Dachuan, Bryant, Stephen H.
Publicado em 2005

CDD: a conserved domain database for interactive domain family analysis

Por Marchler-Bauer, Aron, Anderson, John B., Derbyshire, Myra K., DeWeese-Scott, Carol, Gonzales, Noreen R., Gwadz, Marc, Hao, Luning, He, Siqian, Hurwitz, David I., Jackson, John D., Ke, Zhaoxi, Krylov, Dmitri, Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Lu, Fu, Lu, Shennan, Marchler, Gabriele H., Mullokandov, Mikhail, Song, James S., Thanki, Narmada, Yamashita, Roxanne A., Yin, Jodie J., Zhang, Dachuan, Bryant, Stephen H.
Publicado em 2007

CDD: a Conserved Domain Database for the functional annotation of proteins

Por Marchler-Bauer, Aron, Lu, Shennan, Anderson, John B., Chitsaz, Farideh, Derbyshire, Myra K., DeWeese-Scott, Carol, Fong, Jessica H., Geer, Lewis Y., Geer, Renata C., Gonzales, Noreen R., Gwadz, Marc, Hurwitz, David I., Jackson, John D., Ke, Zhaoxi, Lanczycki, Christopher J., Lu, Fu, Marchler, Gabriele H., Mullokandov, Mikhail, Omelchenko, Marina V., Robertson, Cynthia L., Song, James S., Thanki, Narmada, Yamashita, Roxanne A., Zhang, Dachuan, Zhang, Naigong, Zheng, Chanjuan, Bryant, Stephen H.
Publicado em 2011

MMDB: Entrez's 3D-structure database

Por Chen, Jie, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, Hurwitz, David I., Jackson, John D., Jacobs, Aviva R., Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Madej, Thomas, Marchler-Bauer, Aron, Marchler, Gabriele H., Mazumder, Raja, Nikolskaya, Anastasia N., Rao, Bachoti S., Panchenko, Anna R., Shoemaker, Benjamin A., Simonyan, Vahan, Song, James S., Thiessen, Paul A., Vasudevan, Sona, Wang, Yanli, Yamashita, Roxanne A., Yin, Jodie J., Bryant, Stephen H.
Publicado em 2003

CDD: a curated Entrez database of conserved domain alignments

Por Marchler-Bauer, Aron, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, Hurwitz, David I., Jackson, John D., Jacobs, Aviva R., Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Madej, Thomas, Marchler, Gabriele H., Mazumder, Raja, Nikolskaya, Anastasia N., Panchenko, Anna R., Rao, Bachoti S., Shoemaker, Benjamin A., Simonyan, Vahan, Song, James S., Thiessen, Paul A., Vasudevan, Sona, Wang, Yanli, Yamashita, Roxanne A., Yin, Jodie J., Bryant, Stephen H.
Publicado em 2003

CDD: specific functional annotation with the Conserved Domain Database

Por Marchler-Bauer, Aron, Anderson, John B., Chitsaz, Farideh, Derbyshire, Myra K., DeWeese-Scott, Carol, Fong, Jessica H., Geer, Lewis Y., Geer, Renata C., Gonzales, Noreen R., Gwadz, Marc, He, Siqian, Hurwitz, David I., Jackson, John D., Ke, Zhaoxi, Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Lu, Fu, Lu, Shennan, Marchler, Gabriele H., Mullokandov, Mikhail, Song, James S., Tasneem, Asba, Thanki, Narmada, Yamashita, Roxanne A., Zhang, Dachuan, Zhang, Naigong, Bryant, Stephen H.
Publicado em 2009