Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

per Nawrocki, Eric P, Eddy, Sean R
Publicat 2007

Infernal 1.1: 100-fold faster RNA homology searches

per Nawrocki, Eric P., Eddy, Sean R.
Publicat 2013

Special Focus: Bioinformatics

per Nawrocki, Eric P., Burge, Sarah W.
Publicat 2013

Computational identification of functional RNA homologs in metagenomic data

per Nawrocki, Eric P., Eddy, Sean R.
Publicat 2013

Infernal 1.0: inference of RNA alignments

per Nawrocki, Eric P., Kolbe, Diana L., Eddy, Sean R.
Publicat 2009

Infernal 1.0: inference of RNA alignments

per Nawrocki, Eric P., Kolbe, Diana L., Eddy, Sean R.
Publicat 2009

Group I introns are widespread in archaea

per Nawrocki, Eric P, Jones, Thomas A, Eddy, Sean R
Publicat a Nucleic Acids Res (2018)

RNIE: genome-wide prediction of bacterial intrinsic terminators

per Gardner, Paul P., Barquist, Lars, Bateman, Alex, Nawrocki, Eric P., Weinberg, Zasha
Publicat 2011

VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening

per Schäffer, Alejandro A, Nawrocki, Eric P, Choi, Yoon, Kitts, Paul A, Karsch-Mizrachi, Ilene, McVeigh, Richard
Publicat a Bioinformatics (2018)

Non-coding RNA analysis using the Rfam database

per Kalvari, Ioanna, Nawrocki, Eric P., Argasinska, Joanna, Quinones-Olvera, Natalia, Finn, Robert D., Bateman, Alex, Petrov, Anton I.
Publicat a Curr Protoc Bioinformatics (2018)

VADR: validation and annotation of virus sequence submissions to GenBank

per Schäffer, Alejandro A., Hatcher, Eneida L., Yankie, Linda, Shonkwiler, Lara, Brister, J. Rodney, Karsch-Mizrachi, Ilene, Nawrocki, Eric P.
Publicat a BMC Bioinformatics (2020)

Integrating Membrane Transport with Male Gametophyte Development and Function through Transcriptomics

per Bock, Kevin W., Honys, David, Ward, John M., Padmanaban, Senthilkumar, Nawrocki, Eric P., Hirschi, Kendal D., Twell, David, Sze, Heven
Publicat 2006

Virus Variation Resource – improved response to emergent viral outbreaks

per Hatcher, Eneida L., Zhdanov, Sergey A., Bao, Yiming, Blinkova, Olga, Nawrocki, Eric P., Ostapchuck, Yuri, Schäffer, Alejandro A., Brister, J. Rodney
Publicat a Nucleic Acids Res (2017)

Rfam 11.0: 10 years of RNA families

per Burge, Sarah W., Daub, Jennifer, Eberhardt, Ruth, Tate, John, Barquist, Lars, Nawrocki, Eric P., Eddy, Sean R., Gardner, Paul P., Bateman, Alex
Publicat 2013

NCBI prokaryotic genome annotation pipeline

per Tatusova, Tatiana, DiCuccio, Michael, Badretdin, Azat, Chetvernin, Vyacheslav, Nawrocki, Eric P., Zaslavsky, Leonid, Lomsadze, Alexandre, Pruitt, Kim D., Borodovsky, Mark, Ostell, James
Publicat a Nucleic Acids Res (2016)

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

per Kalvari, Ioanna, Argasinska, Joanna, Quinones-Olvera, Natalia, Nawrocki, Eric P, Rivas, Elena, Eddy, Sean R, Bateman, Alex, Finn, Robert D, Petrov, Anton I
Publicat a Nucleic Acids Res (2018)

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

per McDonald, Daniel, Price, Morgan N, Goodrich, Julia, Nawrocki, Eric P, DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob, Hugenholtz, Philip
Publicat 2012

Rfam: updates to the RNA families database

per Gardner, Paul P., Daub, Jennifer, Tate, John G., Nawrocki, Eric P., Kolbe, Diana L., Lindgreen, Stinus, Wilkinson, Adam C., Finn, Robert D., Griffiths-Jones, Sam, Eddy, Sean R., Bateman, Alex
Publicat 2009

Rfam: Wikipedia, clans and the “decimal” release

per Gardner, Paul P., Daub, Jennifer, Tate, John, Moore, Benjamin L., Osuch, Isabelle H., Griffiths-Jones, Sam, Finn, Robert D., Nawrocki, Eric P., Kolbe, Diana L., Eddy, Sean R., Bateman, Alex
Publicat 2011

Rfam 12.0: updates to the RNA families database

per Nawrocki, Eric P., Burge, Sarah W., Bateman, Alex, Daub, Jennifer, Eberhardt, Ruth Y., Eddy, Sean R., Floden, Evan W., Gardner, Paul P., Jones, Thomas A., Tate, John, Finn, Robert D.
Publicat a Nucleic Acids Res (2014)