Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

Por Liu, Zongzhi, DeSantis, Todd Z., Andersen, Gary L., Knight, Rob
Publicado em 2008

New Perspectives on Microbial Community Distortion after Whole-Genome Amplification

Por Probst, Alexander J., Weinmaier, Thomas, DeSantis, Todd Z., Santo Domingo, Jorge W., Ashbolt, Nicholas
Publicado no PLoS One (2015)

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool

Por Dalevi, Daniel, DeSantis, Todd Z, Fredslund, Jakob, Andersen, Gary L, Markowitz, Victor M, Hugenholtz, Philip
Publicado em 2007

PyNAST: a flexible tool for aligning sequences to a template alignment

Por Caporaso, J. Gregory, Bittinger, Kyle, Bushman, Frederic D., DeSantis, Todd Z., Andersen, Gary L., Knight, Rob
Publicado em 2010

Integrated Microbial Survey Analysis of Prokaryotic Communities for the PhyloChip Microarray

Por Schatz, Michael C., Phillippy, Adam M., Gajer, Pawel, DeSantis, Todd Z., Andersen, Gary L., Ravel, Jacques
Publicado em 2010

Expansion of urease- and uricase-containing, indole- and p-cresol-forming and contraction of short chain fatty acid-producing intestinal microbiota in ESRD

Por Wong, Jakk, Piceno, Yvette M., DeSantis, Todd Z., Pahl, Madeleine, Andersen, Gary L., Vaziri, Nosratola D.
Publicado em 2014

Supervised classification of microbiota mitigates mislabeling errors

Por Knights, Dan, Kuczynski, Justin, Koren, Omry, Ley, Ruth E, Field, Dawn, Knight, Rob, DeSantis, Todd Z, Kelley, Scott T
Publicado em 2011

Comparing Bacterial Community Composition of Healthy and Dark Spot-Affected Siderastrea siderea in Florida and the Caribbean

Por Kellogg, Christina A., Piceno, Yvette M., Tom, Lauren M., DeSantis, Todd Z., Gray, Michael A., Andersen, Gary L.
Publicado em 2014

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Por Iwai, Shoko, Weinmaier, Thomas, Schmidt, Brian L., Albertson, Donna G., Poloso, Neil J., Dabbagh, Karim, DeSantis, Todd Z.
Publicado no PLoS One (2016)

Urban aerosols harbor diverse and dynamic bacterial populations

Por Brodie, Eoin L., DeSantis, Todd Z., Parker, Jordan P. Moberg, Zubietta, Ingrid X., Piceno, Yvette M., Andersen, Gary L.
Publicado em 2007

High-Density Microarray of Small-Subunit Ribosomal DNA Probes

Por Wilson, Kenneth H., Wilson, Wendy J., Radosevich, Jennifer L., DeSantis, Todd Z., Viswanathan, Vijay S., Kuczmarski, Thomas A., Andersen, Gary L.
Publicado em 2002

Comparing Bacterial Community Composition between Healthy and White Plague-Like Disease States in Orbicella annularis Using PhyloChip™ G3 Microarrays

Por Kellogg, Christina A., Piceno, Yvette M., Tom, Lauren M., DeSantis, Todd Z., Gray, Michael A., Zawada, David G., Andersen, Gary L.
Publicado em 2013

Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences

Por Narayan, Nicole R., Weinmaier, Thomas, Laserna-Mendieta, Emilio J., Claesson, Marcus J., Shanahan, Fergus, Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z.
Publicado no BMC Genomics (2020)

Correction to: Piphillin predicts metagenomic composition and dynamics from DADA2- corrected 16S rDNA sequences

Por Narayan, Nicole R., Weinmaier, Thomas, Laserna-Mendieta, Emilio J., Claesson, Marcus J., Shanahan, Fergus, Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z.
Publicado no BMC Genomics (2020)

Gut microbiota in MS: possible influence of immunomodulators

Por Cantarel, Brandi L., Waubant, Emmanuelle, Chehoud, Christel, Kuczynski, Justin, DeSantis, Todd Z., Warrington, Janet, Venkatesan, Arun, Fraser, Claire M., Mowry, Ellen M.
Publicado no J Investig Med (2015)

Simrank: Rapid and sensitive general-purpose k-mer search tool

Por DeSantis, Todd Z, Keller, Keith, Karaoz, Ulas, Alekseyenko, Alexander V, Singh, Navjeet NS, Brodie, Eoin L, Pei, Zhiheng, Andersen, Gary L, Larsen, Niels
Publicado em 2011

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

Por Werner, Jeffrey J, Koren, Omry, Hugenholtz, Philip, DeSantis, Todd Z, Walters, William A, Caporaso, J Gregory, Angenent, Largus T, Knight, Rob, Ley, Ruth E
Publicado em 2012

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

Por McDonald, Daniel, Price, Morgan N, Goodrich, Julia, Nawrocki, Eric P, DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob, Hugenholtz, Philip
Publicado em 2012

Truffle Brûlés Have an Impact on the Diversity of Soil Bacterial Communities

Por Mello, Antonietta, Ding, Guo-Chun, Piceno, Yvette M., Napoli, Chiara, Tom, Lauren M., DeSantis, Todd Z., Andersen, Gary L., Smalla, Kornelia, Bonfante, Paola
Publicado em 2013

Characterization of Coastal Urban Watershed Bacterial Communities Leads to Alternative Community-Based Indicators

Por Wu, Cindy H., Sercu, Bram, Van De Werfhorst, Laurie C., Wong, Jakk, DeSantis, Todd Z., Brodie, Eoin L., Hazen, Terry C., Holden, Patricia A., Andersen, Gary L.
Publicado em 2010