Genomic and Physiological Characterization of the Chromate-Reducing, Aquifer-Derived Firmicute Pelosinus sp. Strain HCF1

Por Beller, Harry R., Han, Ruyang, Karaoz, Ulas, Lim, HsiaoChien, Brodie, Eoin L.
Publicado em 2013

Whole-genome annotation by using evidence integration in functional-linkage networks

Por Karaoz, Ulas, Murali, T. M., Letovsky, Stan, Zheng, Yu, Ding, Chunming, Cantor, Charles R., Kasif, Simon
Publicado em 2004

Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer

Por Jewell, Talia N M, Karaoz, Ulas, Brodie, Eoin L, Williams, Kenneth H, Beller, Harry R
Publicado no ISME J (2016)

Bacteria increase arid-land soil surface temperature through the production of sunscreens

Por Couradeau, Estelle, Karaoz, Ulas, Lim, Hsiao Chien, Nunes da Rocha, Ulisses, Northen, Trent, Brodie, Eoin, Garcia-Pichel, Ferran
Publicado no Nat Commun (2016)

Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer

Por Jewell, Talia N. M., Karaoz, Ulas, Bill, Markus, Chakraborty, Romy, Brodie, Eoin L., Williams, Kenneth H., Beller, Harry R.
Publicado no Front Microbiol (2017)

Uncovering multiple molecular targets for caffeine using a drug target validation strategy combining A(2A) receptor knockout mice with microarray profiling

Por Yu, Liqun, Coelho, Joana E., Zhang, Xiaoling, Fu, Yutao, Tillman, Abigail, Karaoz, Ulas, Fredholm, Bertil B., Weng, Zhiping, Chen, Jiang-Fan
Publicado em 2009

Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries

Por Nyyssönen, Mari, Tran, Huu M., Karaoz, Ulas, Weihe, Claudia, Hadi, Masood Z., Martiny, Jennifer B. H., Martiny, Adam C., Brodie, Eoin L.
Publicado em 2013

Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens

Por Srinivasan, Ramya, Karaoz, Ulas, Volegova, Marina, MacKichan, Joanna, Kato-Maeda, Midori, Miller, Steve, Nadarajan, Rohan, Brodie, Eoin L., Lynch, Susan V.
Publicado no PLoS One (2015)

Structure of the human gastric bacterial community in relation to Helicobacter pylori status

Por Maldonado-Contreras, Ana, Goldfarb, Kate C, Godoy-Vitorino, Filipa, Karaoz, Ulas, Contreras, Mónica, Blaser, Martin J, Brodie, Eoin L, Dominguez-Bello, Maria G
Publicado em 2011

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

Por Goldfarb, Katherine C., Karaoz, Ulas, Hanson, China A., Santee, Clark A., Bradford, Mark A., Treseder, Kathleen K., Wallenstein, Matthew D., Brodie, Eoin L.
Publicado em 2011

Human Papillomavirus Community in Healthy Persons, Defined by Metagenomics Analysis of Human Microbiome Project Shotgun Sequencing Data Sets

Por Ma, Yingfei, Madupu, Ramana, Karaoz, Ulas, Nossa, Carlos W., Yang, Liying, Yooseph, Shibu, Yachimski, Patrick S., Brodie, Eoin L., Nelson, Karen E., Pei, Zhiheng
Publicado em 2014

Simrank: Rapid and sensitive general-purpose k-mer search tool

Por DeSantis, Todd Z, Keller, Keith, Karaoz, Ulas, Alekseyenko, Alexander V, Singh, Navjeet NS, Brodie, Eoin L, Pei, Zhiheng, Andersen, Gary L, Larsen, Niels
Publicado em 2011

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

Por Godoy-Vitorino, Filipa, Goldfarb, Katherine C, Karaoz, Ulas, Leal, Sara, Garcia-Amado, Maria A, Hugenholtz, Philip, Tringe, Susannah G, Brodie, Eoin L, Dominguez-Bello, Maria Gloria
Publicado em 2012

Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee

Por Ceja-Navarro, Javier A., Vega, Fernando E., Karaoz, Ulas, Hao, Zhao, Jenkins, Stefan, Lim, Hsiao Chien, Kosina, Petr, Infante, Francisco, Northen, Trent R., Brodie, Eoin L.
Publicado no Nat Commun (2015)

Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus

Por Ceja-Navarro, Javier A, Nguyen, Nhu H, Karaoz, Ulas, Gross, Stephanie R, Herman, Donald J, Andersen, Gary L, Bruns, Thomas D, Pett-Ridge, Jennifer, Blackwell, Meredith, Brodie, Eoin L
Publicado em 2014

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome

Por Trinklein, Nathan D., Karaöz, Ulaş, Wu, Jiaqian, Halees, Anason, Force Aldred, Shelley, Collins, Patrick J., Zheng, Deyou, Zhang, Zhengdong D., Gerstein, Mark B., Snyder, Michael, Myers, Richard M., Weng, Zhiping
Publicado em 2007

Exometabolite niche partitioning among sympatric soil bacteria

Por Baran, Richard, Brodie, Eoin L., Mayberry-Lewis, Jazmine, Hummel, Eric, Da Rocha, Ulisses Nunes, Chakraborty, Romy, Bowen, Benjamin P., Karaoz, Ulas, Cadillo-Quiroz, Hinsby, Garcia-Pichel, Ferran, Northen, Trent R.
Publicado no Nat Commun (2015)

Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust

Por Nunes da Rocha, Ulisses, Cadillo-Quiroz, Hinsby, Karaoz, Ulas, Rajeev, Lara, Klitgord, Niels, Dunn, Sean, Truong, Viet, Buenrostro, Mayra, Bowen, Benjamin P., Garcia-Pichel, Ferran, Mukhopadhyay, Aindrila, Northen, Trent R., Brodie, Eoin L.
Publicado no Front Microbiol (2015)

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

Por Anantharaman, Karthik, Brown, Christopher T., Hug, Laura A., Sharon, Itai, Castelle, Cindy J., Probst, Alexander J., Thomas, Brian C., Singh, Andrea, Wilkins, Michael J., Karaoz, Ulas, Brodie, Eoin L., Williams, Kenneth H., Hubbard, Susan S., Banfield, Jillian F.
Publicado no Nat Commun (2016)

Induction of intestinal Th17 cells by segmented filamentous bacteria

Por Ivanov, Ivaylo I., Atarashi, Koji, Manel, Nicolas, Brodie, Eoin L., Shima, Tatsuichiro, Karaoz, Ulas, Wei, Dongguang, Goldfarb, Katherine C., Santee, Clark A., Lynch, Susan V., Tanoue, Takeshi, Imaoka, Akemi, Itoh, Kikuji, Takeda, Kiyoshi, Umesaki, Yoshinori, Honda, Kenya, Littman, Dan R.
Publicado em 2009