Phylogenetic Patterns in the Microbial Response to Resource Availability: Amino Acid Incorporation in San Francisco Bay

av Mayali, Xavier, Weber, Peter K., Mabery, Shalini, Pett-Ridge, Jennifer
Publicerad 2014

System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris

av Navid, Ali, Jiao, Yongqin, Wong, Sergio Ernesto, Pett-Ridge, Jennifer
I publikationen BMC Bioinformatics (2019)

Long-term litter decomposition controlled by manganese redox cycling

av Keiluweit, Marco, Nico, Peter, Harmon, Mark E., Mao, Jingdong, Pett-Ridge, Jennifer, Kleber, Markus
I publikationen Proc Natl Acad Sci U S A (2015)

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

av Starr, Evan P., Nuccio, Erin E., Pett-Ridge, Jennifer, Banfield, Jillian F., Firestone, Mary K.
I publikationen Proc Natl Acad Sci U S A (2019)

High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use

av Mayali, Xavier, Weber, Peter K, Brodie, Eoin L, Mabery, Shalini, Hoeprich, Paul D, Pett-Ridge, Jennifer
Publicerad 2012

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

av Bryson, Samuel, Li, Zhou, Pett-Ridge, Jennifer, Hettich, Robert L., Mayali, Xavier, Pan, Chongle, Mueller, Ryan S.
I publikationen mSystems (2016)

Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP

av Dekas, Anne E., Parada, Alma E., Mayali, Xavier, Fuhrman, Jed A., Wollard, Jessica, Weber, Peter K., Pett-Ridge, Jennifer
I publikationen Front Microbiol (2019)

Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California

av Mueller, Ryan S., Bryson, Sam, Kieft, Brandon, Li, Zhou, Pett-Ridge, Jennifer, Chavez, Francisco, Hettich, Robert L., Pan, Chongle, Mayali, Xavier
I publikationen Genome Announc (2015)

Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches

av Yuan, Mengting Maggie, Kakouridis, Anne, Starr, Evan, Nguyen, Nhu, Shi, Shengjing, Pett-Ridge, Jennifer, Nuccio, Erin, Zhou, Jizhong, Firestone, Mary
I publikationen mBio (2021)

Phylogenetically conserved resource partitioning in the coastal microbial loop

av Bryson, Samuel, Li, Zhou, Chavez, Francisco, Weber, Peter K, Pett-Ridge, Jennifer, Hettich, Robert L, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S
I publikationen ISME J (2017)

Multimodal LA-ICP-MS and nanoSIMS imaging enables copper mapping within photoreceptor megamitochondria in a zebrafish model of Menkes disease

av Ackerman, Cheri M., Weber, Peter K., Xiao, Tong, Thai, Bao, Kuo, Tiffani J., Zhang, Emily, Pett-Ridge, Jennifer, Chang, Christopher J.
I publikationen Metallomics (2018)

VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature

av Zablocki, Olivier, Michelsen, Michelle, Burris, Marie, Solonenko, Natalie, Warwick-Dugdale, Joanna, Ghosh, Romik, Pett-Ridge, Jennifer, Sullivan, Matthew B., Temperton, Ben
I publikationen PeerJ (2021)

Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-F...

av Behrens, Sebastian, Lösekann, Tina, Pett-Ridge, Jennifer, Weber, Peter K., Ng, Wing-On, Stevenson, Bradley S., Hutcheon, Ian D., Relman, David A., Spormann, Alfred M.
Publicerad 2008

Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria

av Everroad, R. Craig, Stuart, Rhona K., Bebout, Brad M., Detweiler, Angela M., Lee, Jackson Z., Woebken, Dagmar, Prufert-Bebout, Leslie, Pett-Ridge, Jennifer
I publikationen Stand Genomic Sci (2016)

Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat

av Lee, Jackson Z., Everroad, R. Craig, Karaoz, Ulas, Detweiler, Angela M., Pett-Ridge, Jennifer, Weber, Peter K., Prufert-Bebout, Leslie, Bebout, Brad M.
I publikationen PLoS One (2018)

Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1

av Everroad, R. Craig, Woebken, Dagmar, Singer, Steven W., Burow, Luke C., Kyrpides, Nikos, Woyke, Tanja, Goodwin, Lynne, Detweiler, Angela, Prufert-Bebout, Leslie, Pett-Ridge, Jennifer
Publicerad 2013

Cyanobacterial reuse of extracellular organic carbon in microbial mats

av Stuart, Rhona K, Mayali, Xavier, Lee, Jackson Z, Craig Everroad, R, Hwang, Mona, Bebout, Brad M, Weber, Peter K, Pett-Ridge, Jennifer, Thelen, Michael P
I publikationen ISME J (2016)

Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil

av Blazewicz, Steven J., Hungate, Bruce A., Koch, Benjamin J., Nuccio, Erin E., Morrissey, Ember, Brodie, Eoin L., Schwartz, Egbert, Pett-Ridge, Jennifer, Firestone, Mary K.
I publikationen ISME J (2020)

Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry

av Finzi-Hart, Juliette A., Pett-Ridge, Jennifer, Weber, Peter K., Popa, Radu, Fallon, Stewart J., Gunderson, Troy, Hutcheon, Ian D., Nealson, Kenneth H., Capone, Douglas G.
Publicerad 2009

Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis

av Woebken, Dagmar, Burow, Luke C, Prufert-Bebout, Leslie, Bebout, Brad M, Hoehler, Tori M, Pett-Ridge, Jennifer, Spormann, Alfred M, Weber, Peter K, Singer, Steven W
Publicerad 2012