Phylogenetic Patterns in the Microbial Response to Resource Availability: Amino Acid Incorporation in San Francisco Bay

Tekijä Mayali, Xavier, Weber, Peter K., Mabery, Shalini, Pett-Ridge, Jennifer
Julkaistu 2014

System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris

Tekijä Navid, Ali, Jiao, Yongqin, Wong, Sergio Ernesto, Pett-Ridge, Jennifer
Julkaisussa BMC Bioinformatics (2019)

Long-term litter decomposition controlled by manganese redox cycling

Tekijä Keiluweit, Marco, Nico, Peter, Harmon, Mark E., Mao, Jingdong, Pett-Ridge, Jennifer, Kleber, Markus
Julkaisussa Proc Natl Acad Sci U S A (2015)

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

Tekijä Starr, Evan P., Nuccio, Erin E., Pett-Ridge, Jennifer, Banfield, Jillian F., Firestone, Mary K.
Julkaisussa Proc Natl Acad Sci U S A (2019)

High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use

Tekijä Mayali, Xavier, Weber, Peter K, Brodie, Eoin L, Mabery, Shalini, Hoeprich, Paul D, Pett-Ridge, Jennifer
Julkaistu 2012

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

Tekijä Bryson, Samuel, Li, Zhou, Pett-Ridge, Jennifer, Hettich, Robert L., Mayali, Xavier, Pan, Chongle, Mueller, Ryan S.
Julkaisussa mSystems (2016)

Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP

Tekijä Dekas, Anne E., Parada, Alma E., Mayali, Xavier, Fuhrman, Jed A., Wollard, Jessica, Weber, Peter K., Pett-Ridge, Jennifer
Julkaisussa Front Microbiol (2019)

Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California

Tekijä Mueller, Ryan S., Bryson, Sam, Kieft, Brandon, Li, Zhou, Pett-Ridge, Jennifer, Chavez, Francisco, Hettich, Robert L., Pan, Chongle, Mayali, Xavier
Julkaisussa Genome Announc (2015)

Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches

Tekijä Yuan, Mengting Maggie, Kakouridis, Anne, Starr, Evan, Nguyen, Nhu, Shi, Shengjing, Pett-Ridge, Jennifer, Nuccio, Erin, Zhou, Jizhong, Firestone, Mary
Julkaisussa mBio (2021)

Phylogenetically conserved resource partitioning in the coastal microbial loop

Tekijä Bryson, Samuel, Li, Zhou, Chavez, Francisco, Weber, Peter K, Pett-Ridge, Jennifer, Hettich, Robert L, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S
Julkaisussa ISME J (2017)

Multimodal LA-ICP-MS and nanoSIMS imaging enables copper mapping within photoreceptor megamitochondria in a zebrafish model of Menkes disease

Tekijä Ackerman, Cheri M., Weber, Peter K., Xiao, Tong, Thai, Bao, Kuo, Tiffani J., Zhang, Emily, Pett-Ridge, Jennifer, Chang, Christopher J.
Julkaisussa Metallomics (2018)

VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature

Tekijä Zablocki, Olivier, Michelsen, Michelle, Burris, Marie, Solonenko, Natalie, Warwick-Dugdale, Joanna, Ghosh, Romik, Pett-Ridge, Jennifer, Sullivan, Matthew B., Temperton, Ben
Julkaisussa PeerJ (2021)

Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-F...

Tekijä Behrens, Sebastian, Lösekann, Tina, Pett-Ridge, Jennifer, Weber, Peter K., Ng, Wing-On, Stevenson, Bradley S., Hutcheon, Ian D., Relman, David A., Spormann, Alfred M.
Julkaistu 2008

Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria

Tekijä Everroad, R. Craig, Stuart, Rhona K., Bebout, Brad M., Detweiler, Angela M., Lee, Jackson Z., Woebken, Dagmar, Prufert-Bebout, Leslie, Pett-Ridge, Jennifer
Julkaisussa Stand Genomic Sci (2016)

Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat

Tekijä Lee, Jackson Z., Everroad, R. Craig, Karaoz, Ulas, Detweiler, Angela M., Pett-Ridge, Jennifer, Weber, Peter K., Prufert-Bebout, Leslie, Bebout, Brad M.
Julkaisussa PLoS One (2018)

Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1

Tekijä Everroad, R. Craig, Woebken, Dagmar, Singer, Steven W., Burow, Luke C., Kyrpides, Nikos, Woyke, Tanja, Goodwin, Lynne, Detweiler, Angela, Prufert-Bebout, Leslie, Pett-Ridge, Jennifer
Julkaistu 2013

Cyanobacterial reuse of extracellular organic carbon in microbial mats

Tekijä Stuart, Rhona K, Mayali, Xavier, Lee, Jackson Z, Craig Everroad, R, Hwang, Mona, Bebout, Brad M, Weber, Peter K, Pett-Ridge, Jennifer, Thelen, Michael P
Julkaisussa ISME J (2016)

Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil

Tekijä Blazewicz, Steven J., Hungate, Bruce A., Koch, Benjamin J., Nuccio, Erin E., Morrissey, Ember, Brodie, Eoin L., Schwartz, Egbert, Pett-Ridge, Jennifer, Firestone, Mary K.
Julkaisussa ISME J (2020)

Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry

Tekijä Finzi-Hart, Juliette A., Pett-Ridge, Jennifer, Weber, Peter K., Popa, Radu, Fallon, Stewart J., Gunderson, Troy, Hutcheon, Ian D., Nealson, Kenneth H., Capone, Douglas G.
Julkaistu 2009

Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis

Tekijä Woebken, Dagmar, Burow, Luke C, Prufert-Bebout, Leslie, Bebout, Brad M, Hoehler, Tori M, Pett-Ridge, Jennifer, Spormann, Alfred M, Weber, Peter K, Singer, Steven W
Julkaistu 2012