Distributions of Extracellular Peptidases Across Prokaryotic Genomes Reflect Phylogeny and Habitat

door Nguyen, Trang T. H., Myrold, David D., Mueller, Ryan S.
Gepubliceerd in Front Microbiol (2019)

Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae

door Kehlet-Delgado, Hanna, Häse, Claudia C., Mueller, Ryan S.
Gepubliceerd in BMC Genomics (2020)

Recovery and Community Succession of the Zostera marina Rhizobiome after Transplantation

door Wang, Lu, English, Mary K., Tomas, Fiona, Mueller, Ryan S.
Gepubliceerd in Appl Environ Microbiol (2021)

Three Draft Genome Sequences of Vibrio coralliilyticus Strains Isolated from Bivalve Hatcheries

door Kehlet-Delgado, Hanna, Richards, Gary P., Häse, Claudia, Mueller, Ryan S.
Gepubliceerd in Genome Announc (2017)

Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes

door Crump, Byron C., Wojahn, John M., Tomas, Fiona, Mueller, Ryan S.
Gepubliceerd in Front Microbiol (2018)

Indole Acts as an Extracellular Cue Regulating Gene Expression in Vibrio cholerae

door Mueller, Ryan S., Beyhan, Sinem, Saini, Simran G., Yildiz, Fitnat H., Bartlett, Douglas H.
Gepubliceerd in 2009

Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C(1) Compound Oxidation

door Denef, Vincent J., Mueller, Ryan S., Chiang, Edna, Liebig, James R., Vanderploeg, Henry A.
Gepubliceerd in Appl Environ Microbiol (2016)

Vibrio cholerae Strains Possess Multiple Strategies for Abiotic and Biotic Surface Colonization

door Mueller, Ryan S., McDougald, Diane, Cusumano, Danielle, Sodhi, Nidhi, Kjelleberg, Staffan, Azam, Farooq, Bartlett, Douglas H.
Gepubliceerd in 2007

Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant

door Brooks, Brandon, Mueller, Ryan S., Young, Jacque C., Morowitz, Michael J., Hettich, Robert L., Banfield, Jillian F.
Gepubliceerd in Front Microbiol (2015)

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

door Bryson, Samuel, Li, Zhou, Pett-Ridge, Jennifer, Hettich, Robert L., Mayali, Xavier, Pan, Chongle, Mueller, Ryan S.
Gepubliceerd in mSystems (2016)

Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities

door Kieft, Brandon, Li, Zhou, Bryson, Samuel, Crump, Byron C., Hettich, Robert, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S.
Gepubliceerd in Front Microbiol (2018)

Carbon fixation and energy metabolisms of a subseafloor olivine biofilm

door Smith, Amy R., Kieft, Brandon, Mueller, Ryan, Fisk, Martin R., Mason, Olivia U., Popa, Radu, Colwell, Frederick S.
Gepubliceerd in ISME J (2019)

Sipros Ensemble improves database searching and filtering for complex metaproteomics

door Guo, Xuan, Li, Zhou, Yao, Qiuming, Mueller, Ryan S, Eng, Jimmy K, Tabb, David L, Hervey, William Judson, Pan, Chongle
Gepubliceerd in Bioinformatics (2018)

Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California

door Mueller, Ryan S., Bryson, Sam, Kieft, Brandon, Li, Zhou, Pett-Ridge, Jennifer, Chavez, Francisco, Hettich, Robert L., Pan, Chongle, Mayali, Xavier
Gepubliceerd in Genome Announc (2015)

Anabaena/Dolichospermum as the source of lethal microcystin levels responsible for a large cattle toxicosis event

door Dreher, Theo W., Collart, Lindsay P., Mueller, Ryan S., Halsey, Kimberly H., Bildfell, Robert J., Schreder, Peter, Sobhakumari, Arya, Ferry, Rodney
Gepubliceerd in Toxicon X (2018)

Structural and functional analysis of the finished genome of the recently isolated toxic Anabaena sp. WA102

door Brown, Nathan M., Mueller, Ryan S., Shepardson, Jonathan W., Landry, Zachary C., Morré, Jeffrey T., Maier, Claudia S., Hardy, F. Joan, Dreher, Theo W.
Gepubliceerd in BMC Genomics (2016)

Phylogenetically conserved resource partitioning in the coastal microbial loop

door Bryson, Samuel, Li, Zhou, Chavez, Francisco, Weber, Peter K, Pett-Ridge, Jennifer, Hettich, Robert L, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S
Gepubliceerd in ISME J (2017)

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities

door Denef, Vincent J., Kalnejais, Linda H., Mueller, Ryan S., Wilmes, Paul, Baker, Brett J., Thomas, Brian C., VerBerkmoes, Nathan C., Hettich, Robert L., Banfield, Jillian F.
Gepubliceerd in 2010

Metabolome-Proteome Differentiation Coupled to Microbial Divergence

door Wilmes, Paul, Bowen, Benjamin P., Thomas, Brian C., Mueller, Ryan S., Denef, Vincent J., VerBerkmoes, Nathan C., Hettich, Robert L., Northen, Trent R., Banfield, Jillian F.
Gepubliceerd in 2010

Defining the Mode of Action of Tetramic Acid Antibacterials Derived from Pseudomonas aeruginosa Quorum Sensing Signals

door Lowery, Colin A., Park, Junguk, Gloeckner, Christian, Meijler, Michael M., Mueller, Ryan S., Boshoff, Helena I., Ulrich, Ricky L., Barry, Clifton E., Bartlett, Douglas H., Kravchenko, Vladimir V., Kaufmann, Gunnar F., Janda, Kim D.
Gepubliceerd in 2009