Distributions of Extracellular Peptidases Across Prokaryotic Genomes Reflect Phylogeny and Habitat

av Nguyen, Trang T. H., Myrold, David D., Mueller, Ryan S.
I publikationen Front Microbiol (2019)

Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae

av Kehlet-Delgado, Hanna, Häse, Claudia C., Mueller, Ryan S.
I publikationen BMC Genomics (2020)

Recovery and Community Succession of the Zostera marina Rhizobiome after Transplantation

av Wang, Lu, English, Mary K., Tomas, Fiona, Mueller, Ryan S.
I publikationen Appl Environ Microbiol (2021)

Three Draft Genome Sequences of Vibrio coralliilyticus Strains Isolated from Bivalve Hatcheries

av Kehlet-Delgado, Hanna, Richards, Gary P., Häse, Claudia, Mueller, Ryan S.
I publikationen Genome Announc (2017)

Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes

av Crump, Byron C., Wojahn, John M., Tomas, Fiona, Mueller, Ryan S.
I publikationen Front Microbiol (2018)

Indole Acts as an Extracellular Cue Regulating Gene Expression in Vibrio cholerae

av Mueller, Ryan S., Beyhan, Sinem, Saini, Simran G., Yildiz, Fitnat H., Bartlett, Douglas H.
Publicerad 2009

Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C(1) Compound Oxidation

av Denef, Vincent J., Mueller, Ryan S., Chiang, Edna, Liebig, James R., Vanderploeg, Henry A.
I publikationen Appl Environ Microbiol (2016)

Vibrio cholerae Strains Possess Multiple Strategies for Abiotic and Biotic Surface Colonization

av Mueller, Ryan S., McDougald, Diane, Cusumano, Danielle, Sodhi, Nidhi, Kjelleberg, Staffan, Azam, Farooq, Bartlett, Douglas H.
Publicerad 2007

Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant

av Brooks, Brandon, Mueller, Ryan S., Young, Jacque C., Morowitz, Michael J., Hettich, Robert L., Banfield, Jillian F.
I publikationen Front Microbiol (2015)

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

av Bryson, Samuel, Li, Zhou, Pett-Ridge, Jennifer, Hettich, Robert L., Mayali, Xavier, Pan, Chongle, Mueller, Ryan S.
I publikationen mSystems (2016)

Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities

av Kieft, Brandon, Li, Zhou, Bryson, Samuel, Crump, Byron C., Hettich, Robert, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S.
I publikationen Front Microbiol (2018)

Carbon fixation and energy metabolisms of a subseafloor olivine biofilm

av Smith, Amy R., Kieft, Brandon, Mueller, Ryan, Fisk, Martin R., Mason, Olivia U., Popa, Radu, Colwell, Frederick S.
I publikationen ISME J (2019)

Sipros Ensemble improves database searching and filtering for complex metaproteomics

av Guo, Xuan, Li, Zhou, Yao, Qiuming, Mueller, Ryan S, Eng, Jimmy K, Tabb, David L, Hervey, William Judson, Pan, Chongle
I publikationen Bioinformatics (2018)

Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California

av Mueller, Ryan S., Bryson, Sam, Kieft, Brandon, Li, Zhou, Pett-Ridge, Jennifer, Chavez, Francisco, Hettich, Robert L., Pan, Chongle, Mayali, Xavier
I publikationen Genome Announc (2015)

Anabaena/Dolichospermum as the source of lethal microcystin levels responsible for a large cattle toxicosis event

av Dreher, Theo W., Collart, Lindsay P., Mueller, Ryan S., Halsey, Kimberly H., Bildfell, Robert J., Schreder, Peter, Sobhakumari, Arya, Ferry, Rodney
I publikationen Toxicon X (2018)

Structural and functional analysis of the finished genome of the recently isolated toxic Anabaena sp. WA102

av Brown, Nathan M., Mueller, Ryan S., Shepardson, Jonathan W., Landry, Zachary C., Morré, Jeffrey T., Maier, Claudia S., Hardy, F. Joan, Dreher, Theo W.
I publikationen BMC Genomics (2016)

Phylogenetically conserved resource partitioning in the coastal microbial loop

av Bryson, Samuel, Li, Zhou, Chavez, Francisco, Weber, Peter K, Pett-Ridge, Jennifer, Hettich, Robert L, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S
I publikationen ISME J (2017)

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities

av Denef, Vincent J., Kalnejais, Linda H., Mueller, Ryan S., Wilmes, Paul, Baker, Brett J., Thomas, Brian C., VerBerkmoes, Nathan C., Hettich, Robert L., Banfield, Jillian F.
Publicerad 2010

Metabolome-Proteome Differentiation Coupled to Microbial Divergence

av Wilmes, Paul, Bowen, Benjamin P., Thomas, Brian C., Mueller, Ryan S., Denef, Vincent J., VerBerkmoes, Nathan C., Hettich, Robert L., Northen, Trent R., Banfield, Jillian F.
Publicerad 2010

Defining the Mode of Action of Tetramic Acid Antibacterials Derived from Pseudomonas aeruginosa Quorum Sensing Signals

av Lowery, Colin A., Park, Junguk, Gloeckner, Christian, Meijler, Michael M., Mueller, Ryan S., Boshoff, Helena I., Ulrich, Ricky L., Barry, Clifton E., Bartlett, Douglas H., Kravchenko, Vladimir V., Kaufmann, Gunnar F., Janda, Kim D.
Publicerad 2009