The dynamic genetic repertoire of microbial communities

Por Wilmes, Paul, Simmons, Sheri L, Denef, Vincent J, Banfield, Jillian F
Publicado em 2009

RNA Preservation Agents and Nucleic Acid Extraction Method Bias Perceived Bacterial Community Composition

Por McCarthy, Ann, Chiang, Edna, Schmidt, Marian L., Denef, Vincent J.
Publicado no PLoS One (2015)

Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria

Por Denef, Vincent J., Fujimoto, Masanori, Berry, Michelle A., Schmidt, Marian L.
Publicado no Front Microbiol (2016)

Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C(1) Compound Oxidation

Por Denef, Vincent J., Mueller, Ryan S., Chiang, Edna, Liebig, James R., Vanderploeg, Henry A.
Publicado no Appl Environ Microbiol (2016)

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

Por Belnap, Christopher P, Pan, Chongle, Denef, Vincent J, Samatova, Nagiza F, Hettich, Robert L, Banfield, Jillian F
Publicado em 2011

Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation

Por Simmons, Sheri L, DiBartolo, Genevieve, Denef, Vincent J, Goltsman, Daniela S. Aliaga, Thelen, Michael P, Banfield, Jillian F
Publicado em 2008

Strain-resolved community genomic analysis of gut microbial colonization in a premature infant

Por Morowitz, Michael J., Denef, Vincent J., Costello, Elizabeth K., Thomas, Brian C., Poroyko, Valeriy, Relman, David A., Banfield, Jillian F.
Publicado em 2011

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea

Por Yelton, Alexis P, Comolli, Luis R, Justice, Nicholas B, Castelle, Cindy, Denef, Vincent J, Thomas, Brian C, Banfield, Jillian F
Publicado em 2013

Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes

Por Berry, Michelle A., White, Jeffrey D., Davis, Timothy W., Jain, Sunit, Johengen, Thomas H., Dick, Gregory J., Sarnelle, Orlando, Denef, Vincent J.
Publicado no Front Microbiol (2017)

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities

Por Denef, Vincent J., Kalnejais, Linda H., Mueller, Ryan S., Wilmes, Paul, Baker, Brett J., Thomas, Brian C., VerBerkmoes, Nathan C., Hettich, Robert L., Banfield, Jillian F.
Publicado em 2010

Metabolome-Proteome Differentiation Coupled to Microbial Divergence

Por Wilmes, Paul, Bowen, Benjamin P., Thomas, Brian C., Mueller, Ryan S., Denef, Vincent J., VerBerkmoes, Nathan C., Hettich, Robert L., Northen, Trent R., Banfield, Jillian F.
Publicado em 2010

Persisting Viral Sequences Shape Microbial CRISPR-based Immunity

Por Weinberger, Ariel D., Sun, Christine L., Pluciński, Mateusz M., Denef, Vincent J., Thomas, Brian C., Horvath, Philippe, Barrangou, Rodolphe, Gilmore, Michael S., Getz, Wayne M., Banfield, Jillian F.
Publicado em 2012

Ecological distribution and population physiology defined by proteomics in a natural microbial community

Por Mueller, Ryan S, Denef, Vincent J, Kalnejais, Linda H, Suttle, K Blake, Thomas, Brian C, Wilmes, Paul, Smith, Richard L, Nordstrom, D Kirk, McCleskey, R Blaine, Shah, Manesh B, VerBerkmoes, Nathan C, Hettich, Robert L, Banfield, Jillian F
Publicado em 2010

Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid...

Por Goltsman, Daniela S. Aliaga, Denef, Vincent J., Singer, Steven W., VerBerkmoes, Nathan C., Lefsrud, Mark, Mueller, Ryan S., Dick, Gregory J., Sun, Christine L., Wheeler, Korin E., Zemla, Adam, Baker, Brett J., Hauser, Loren, Land, Miriam, Shah, Manesh B., Thelen, Michael P., Hettich, Robert L., Banfield, Jillian F.
Publicado em 2009

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4

Por Shetty, Ameesha R., de Gannes, Vidya, Obi, Chioma C., Lucas, Susan, Lapidus, Alla, Cheng, Jan-Fang, Goodwin, Lynne A., Pitluck, Samuel, Peters, Linda, Mikhailova, Natalia, Teshima, Hazuki, Han, Cliff, Tapia, Roxanne, Land, Miriam, Hauser, Loren J., Kyrpides, Nikos, Ivanova, Natalia, Pagani, Ioanna, Chain, Patrick S. G., Denef, Vincent J, Woyke, Tanya, Hickey, William J.
Publicado no Stand Genomic Sci (2015)

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

Por Chain, Patrick S. G., Denef, Vincent J., Konstantinidis, Konstantinos T., Vergez, Lisa M., Agulló, Loreine, Reyes, Valeria Latorre, Hauser, Loren, Córdova, Macarena, Gómez, Luis, González, Myriam, Land, Miriam, Lao, Victoria, Larimer, Frank, LiPuma, John J., Mahenthiralingam, Eshwar, Malfatti, Stephanie A., Marx, Christopher J., Parnell, J. Jacob, Ramette, Alban, Richardson, Paul, Seeger, Michael, Smith, Daryl, Spilker, Theodore, Sul, Woo Jun, Tsoi, Tamara V., Ulrich, Luke E., Zhulin, Igor B., Tiedje, James M.
Publicado em 2006