Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns

Por Tian, Wenhong, Samatova, Nagiza F.
Publicado em 2013

Functional Annotation of Hierarchical Modularity

Por Padmanabhan, Kanchana, Wang, Kuangyu, Samatova, Nagiza F.
Publicado em 2012

BioDEAL: community generation of biological annotations

Por Breimyer, Paul, Green, Nathan, Kumar, Vinay, Samatova, Nagiza F
Publicado em 2009

Toward Personalized Network Biomarkers in Alzheimer's Disease: Computing Individualized Genomic and Protein Crosstalk Maps

Por Padmanabhan, Kanchana, Shpanskaya, Katie, Bello, Gonzalo, Doraiswamy, P. Murali, Samatova, Nagiza F.
Publicado no Front Aging Neurosci (2017)

<it>In-silico </it>identification of phenotype-biased functional modules

Por Padmanabhan Kanchana, Wilson Kevin, Rocha Andrea M, Wang Kuangyu, Mihelcic James R, Samatova Nagiza F
Publicado em 2012-06-01

In-silico identification of phenotype-biased functional modules

Por Padmanabhan, Kanchana, Wilson, Kevin, Rocha, Andrea M, Wang, Kuangyu, Mihelcic, James R, Samatova, Nagiza F
Publicado em 2012

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

Por Belnap, Christopher P, Pan, Chongle, Denef, Vincent J, Samatova, Nagiza F, Hettich, Robert L, Banfield, Jillian F
Publicado em 2011

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules

Por Hendrix, Willam, Rocha, Andrea M, Padmanabhan, Kanchana, Choudhary, Alok, Scott, Kathleen, Mihelcic, James R, Samatova, Nagiza F
Publicado em 2011

Spice: discovery of phenotype-determining component interplays

Por Chen, Zhengzhang, Padmanabhan, Kanchana, Rocha, Andrea M, Shpanskaya, Yekaterina, Mihelcic, James R, Scott, Kathleen, Samatova, Nagiza F
Publicado em 2012

Efficient <it>α</it>, <it>β</it>-motif finder for identification of phenotype-related functional modules

Por Schmidt Matthew C, Rocha Andrea M, Padmanabhan Kanchana, Chen Zhengzhang, Scott Kathleen, Mihelcic James R, Samatova Nagiza F
Publicado em 2011-11-01

Efficient α, β-motif finder for identification of phenotype-related functional modules

Por Schmidt, Matthew C, Rocha, Andrea M, Padmanabhan, Kanchana, Chen, Zhengzhang, Scott, Kathleen, Mihelcic, James R, Samatova, Nagiza F
Publicado em 2011

Phenotype Fingerprinting Suggests the Involvement of Single-Genotype Consortia in Degradation of Aromatic Compounds by Rhodopseudomonas palustris

Por Karpinets, Tatiana V., Pelletier, Dale A., Pan, Chongle, Uberbacher, Edward C., Melnichenko, Galina V., Hettich, Robert L., Samatova, Nagiza F.
Publicado em 2009

NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems

Por Schmidt, Matthew C., Rocha, Andrea M., Padmanabhan, Kanchana, Shpanskaya, Yekaterina, Banfield, Jill, Scott, Kathleen, Mihelcic, James R., Samatova, Nagiza F.
Publicado em 2012

Impact of Pretreated Switchgrass and Biomass Carbohydrates on Clostridium thermocellum ATCC 27405 Cellulosome Composition: A Quantitative Proteomic Analysis

Por Raman, Babu, Pan, Chongle, Hurst, Gregory B., Rodriguez, Miguel, McKeown, Catherine K., Lankford, Patricia K., Samatova, Nagiza F., Mielenz, Jonathan R.
Publicado em 2009

Complex biomarker discovery in neuroimaging data: Finding a needle in a haystack()

Por Atluri, Gowtham, Padmanabhan, Kanchana, Fang, Gang, Steinbach, Michael, Petrella, Jeffrey R., Lim, Kelvin, MacDonald, Angus, Samatova, Nagiza F., Doraiswamy, P. Murali, Kumar, Vipin
Publicado em 2013

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

Por Pan, Chongle, Park, Byung H, McDonald, William H, Carey, Patricia A, Banfield, Jillian F, VerBerkmoes, Nathan C, Hettich, Robert L, Samatova, Nagiza F
Publicado em 2010

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions

Por Karpinets, Tatiana V., Romine, Margaret F., Schmoyer, Denise D., Kora, Guruprasad H., Syed, Mustafa H., Leuze, Michael R., Serres, Margrethe H., Park, Byung H., Samatova, Nagiza F., Uberbacher, Edward C.
Publicado em 2010