LGA: a method for finding 3D similarities in protein structures

nork Zemla, Adam
Argitaratua 2003

Structural Re-Alignment in an Immunogenic Surface Region of Ricin A Chain

nork Zemla, Adam T., Ecale Zhou, Carol L.
Argitaratua 2008

A study of quality measures for protein threading models

nork Cristobal, Susana, Zemla, Adam, Fischer, Daniel, Rychlewski, Leszek, Elofsson, Arne
Argitaratua 2001

StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase

nork Zemla, Adam T, Lang, Dorothy M, Kostova, Tanya, Andino, Raul, Ecale Zhou, Carol L
Argitaratua 2011

Computational analysis of pathogen-borne metallo β-lactamases reveals discriminating structural features between B1 types

nork Cadag, Eithon, Vitalis, Elizabeth, Lennox, Kristin P, Zhou, Carol L Ecale, Zemla, Adam T
Argitaratua 2012

SpaK/SpaR Two-component System Characterized by a Structure-driven Domain-fusion Method and in Vitro Phosphorylation Studies

nork Chakicherla, Anu, Ecale Zhou, Carol L., Dang, Martha Ligon, Rodriguez, Virginia, Hansen, J. Norman, Zemla, Adam
Argitaratua 2009

STRALCP—structure alignment-based clustering of proteins

nork Zemla, Adam, Geisbrecht, Brian, Smith, Jason, Lam, Marisa, Kirkpatrick, Bonnie, Wagner, Mark, Slezak, Tom, Zhou, Carol Ecale
Argitaratua 2007

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes

nork Yelton, Alexis P., Thomas, Brian C., Simmons, Sheri L., Wilmes, Paul, Zemla, Adam, Thelen, Michael P., Justice, Nicholas, Banfield, Jillian F.
Argitaratua 2011

The Role of Viral Population Diversity in Adaptation of Bovine Coronavirus to New Host Environments

nork Borucki, Monica K., Allen, Jonathan E., Chen-Harris, Haiyin, Zemla, Adam, Vanier, Gilda, Mabery, Shalini, Torres, Clinton, Hullinger, Pamela, Slezak, Tom
Argitaratua 2013

Characterization of Cytochrome 579, an Unusual Cytochrome Isolated from an Iron-Oxidizing Microbial Community

nork Singer, Steven W., Chan, Clara S., Zemla, Adam, VerBerkmoes, Nathan C., Hwang, Mona, Hettich, Robert L., Banfield, Jillian F., Thelen, Michael P.
Argitaratua 2008

GeneSV – an Approach to Help Characterize Possible Variations in Genomic and Protein Sequences

nork Zemla, Adam, Kostova, Tanya, Gorchakov, Rodion, Volkova, Evgeniya, Beasley, David W. C., Cardosa, Jane, Weaver, Scott C., Vasilakis, Nikos, Naraghi-Arani, Pejman
Argitaratua 2014

MannDB – A microbial database of automated protein sequence analyses and evidence integration for protein characterization

nork Zhou, Carol L Ecale, Lam, Marisa W, Smith, Jason R, Zemla, Adam T, Dyer, Matthew D, Kuczmarski, Thomas A, Vitalis, Elizabeth A, Slezak, Thomas R
Argitaratua 2006

Sendai virus intra-host population dynamics and host immunocompetence influence viral virulence during in vivo passage

nork Peña, José, Chen-Harris, Haiyin, Allen, Jonathan E., Hwang, Mona, Elsheikh, Maher, Mabery, Shalini, Bielefeldt-Ohmann, Helle, Zemla, Adam T., Bowen, Richard A., Borucki, Monica K.
Argitaratua izan da Virus Evol (2016)

Multiscale analysis for patterns of Zika virus genotype emergence, spread, and consequence

nork Borucki, Monica K., Collette, Nicole M., Coffey, Lark L., Van Rompay, Koen K. A., Hwang, Mona H., Thissen, James B., Allen, Jonathan E., Zemla, Adam T.
Argitaratua izan da PLoS One (2019)

Amino acid and structural variability of Yersinia pestis LcrV protein

nork Anisimov, Andrey P., Dentovskaya, Svetlana V., Panfertsev, Evgeniy A., Svetoch, Tat'yana E., Kopylov, Pavel Kh., Segelke, Brent W., Zemla, Adam, Telepnev, Maxim V., Motin, Vladimir L.
Argitaratua 2009

Single Amino Acid Mutations Affect Zika Virus Replication In Vitro and Virulence In Vivo

nork Collette, Nicole M., Lao, Victoria H. I., Weilhammer, Dina R., Zingg, Barbara, Cohen, Shoshana D., Hwang, Mona, Coffey, Lark L., Grady, Sarah L., Zemla, Adam T., Borucki, Monica K.
Argitaratua izan da Viruses (2020)

Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm

nork Stuart, Rhona K., Mayali, Xavier, Boaro, Amy A., Zemla, Adam, Everroad, R. Craig, Nilson, Daniel, Weber, Peter K., Lipton, Mary, Bebout, Brad M., Pett-Ridge, Jennifer, Thelen, Michael P.
Argitaratua izan da mBio (2016)

Identification of Genome-Wide Mutations in Ciprofloxacin-Resistant F. tularensis LVS Using Whole Genome Tiling Arrays and Next Generation Sequencing

nork Jaing, Crystal J., McLoughlin, Kevin S., Thissen, James B., Zemla, Adam, Gardner, Shea N., Vergez, Lisa M., Bourguet, Feliza, Mabery, Shalini, Fofanov, Viacheslav Y., Koshinsky, Heather, Jackson, Paul J.
Argitaratua izan da PLoS One (2016)

The other 90% of the protein: Assessment beyond the Cαs for CASP8 template-based and high-accuracy models

nork Keedy, Daniel A., Williams, Christopher J., Headd, Jeffrey J., Arendall, W. Bryan, Chen, Vincent B., Kapral, Gary J., Gillespie, Robert A., Block, Jeremy N., Zemla, Adam, Richardson, David C., Richardson, Jane S.
Argitaratua 2009

Identification of a Novel Drug Lead That Inhibits HCV Infection and Cell-to-Cell Transmission by Targeting the HCV E2 Glycoprotein

nork Al Olaby, Reem R., Cocquerel, Laurence, Zemla, Adam, Saas, Laure, Dubuisson, Jean, Vielmetter, Jost, Marcotrigiano, Joseph, Khan, Abdul Ghafoor, Catalan, Felipe Vences, Perryman, Alexander L., Freundlich, Joel S., Forli, Stefano, Levy, Shoshana, Balhorn, Rod, Azzazy, Hassan M.
Argitaratua 2014