Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes

by Gardner, Shea N, Slezak, Tom
Published in BMC Bioinformatics (2014)

Design of genomic signatures for pathogen identification and characterization

by Slezak, Tom, Hart, Bradley, Jaing, Crystal
Published in Microbial Forensics (2020)

DNA signatures for detecting genetic engineering in bacteria

by Allen, Jonathan E, Gardner, Shea N, Slezak, Tom R
Published 2008

Limitations of TaqMan PCR for Detecting Divergent Viral Pathogens Illustrated by Hepatitis A, B, C, and E Viruses and Human Immunodeficiency Virus

by Gardner, Shea N., Kuczmarski, Thomas A., Vitalis, Elizabeth A., Slezak, Tom R.
Published 2003

Conserved amino acid markers from past influenza pandemic strains

by Allen, Jonathan E, Gardner, Shea N, Vitalis, Elizabeth A, Slezak, Tom R
Published 2009

A microbial detection array (MDA) for viral and bacterial detection

by Gardner, Shea N, Jaing, Crystal J, McLoughlin, Kevin S, Slezak, Tom R
Published 2010

Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs

by Chen-Harris, Haiyin, Borucki, Monica K, Torres, Clinton, Slezak, Tom R, Allen, Jonathan E
Published 2013

Design of Genomic Signatures for Pathogen Identification and Characterization

by Slezak, Tom, Gardner, Shea, Allen, Jonathan, Vitalis, Elizabeth, Torres, Marisa, Torres, Clinton, Jaing, Crystal
Published in Microbial Forensics (2011)

System To Assess Genome Sequencing Needs for Viral Protein Diagnostics and Therapeutics

by Gardner, Shea N., Kuczmarski, Thomas A., Zhou, Carol E., Lam, Marisa W., Slezak, Tom R.
Published 2005

Draft versus finished sequence data for DNA and protein diagnostic signature development

by Gardner, Shea N., Lam, Marisa W., Smith, Jason R., Torres, Clinton L., Slezak, Tom R.
Published 2005

STRALCP—structure alignment-based clustering of proteins

by Zemla, Adam, Geisbrecht, Brian, Smith, Jason, Lam, Marisa, Kirkpatrick, Bonnie, Wagner, Mark, Slezak, Tom, Zhou, Carol Ecale
Published 2007

Sequencing Needs for Viral Diagnostics

by Gardner, Shea N., Lam, Marisa W., Mulakken, Nisha J., Torres, Clinton L., Smith, Jason R., Slezak, Tom R.
Published 2004

Using populations of human and microbial genomes for organism detection in metagenomes

by Ames, Sasha K., Gardner, Shea N., Marti, Jose Manuel, Slezak, Tom R., Gokhale, Maya B., Allen, Jonathan E.
Published in Genome Res (2015)

The Role of Viral Population Diversity in Adaptation of Bovine Coronavirus to New Host Environments

by Borucki, Monica K., Allen, Jonathan E., Chen-Harris, Haiyin, Zemla, Adam, Vanier, Gilda, Mabery, Shalini, Torres, Clinton, Hullinger, Pamela, Slezak, Tom
Published 2013

A Functional Gene Array for Detection of Bacterial Virulence Elements

by Jaing, Crystal, Gardner, Shea, McLoughlin, Kevin, Mulakken, Nisha, Alegria-Hartman, Michelle, Banda, Phillip, Williams, Peter, Gu, Pauline, Wagner, Mark, Manohar, Chitra, Slezak, Tom
Published 2008

Axiom Microbiome Array, the next generation microarray for high-throughput pathogen and microbiome analysis

by Thissen, James B., Be, Nicholas A., McLoughlin, Kevin, Gardner, Shea, Rack, Paul G., Shapero, Michael H., Rowland, Raymond R. R., Slezak, Tom, Jaing, Crystal J.
Published in PLoS One (2019)

Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing

by Gardner, Shea N., Frey, Kenneth G., Redden, Cassie L., Thissen, James B., Allen, Jonathan E., Allred, Adam F., Dyer, Matthew D., Mokashi, Vishwesh P., Slezak, Tom R.
Published in BMC Res Notes (2015)

Detection of ESKAPE Bacterial Pathogens at the Point of Care Using Isothermal DNA-Based Assays in a Portable Degas-Actuated Microfluidic Diagnostic Assay Platform

by Renner, Lars D., Zan, Jindong, Hu, Linda I., Martinez, Manuel, Resto, Pedro J., Siegel, Adam C., Torres, Clint, Hall, Sara B., Slezak, Tom R., Nguyen, Tuan H., Weibel, Douglas B.
Published in Appl Environ Microbiol (2017)

An attenuated Lassa vaccine in SIV-infected rhesus macaques does not persist or cause arenavirus disease but does elicit Lassa virus-specific immunity

by Zapata, Juan C, Poonia, Bhawna, Bryant, Joseph, Davis, Harry, Ateh, Eugene, George, Lanea, Crasta, Oswald, Zhang, Yan, Slezak, Tom, Jaing, Crystal, Pauza, C David, Goicochea, Marco, Moshkoff, Dmitry, Lukashevich, Igor S, Salvato, Maria S
Published 2013

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

by Sichtig, Heike, Minogue, Timothy, Yan, Yi, Stefan, Christopher, Hall, Adrienne, Tallon, Luke, Sadzewicz, Lisa, Nadendla, Suvarna, Klimke, William, Hatcher, Eneida, Shumway, Martin, Aldea, Dayanara Lebron, Allen, Jonathan, Koehler, Jeffrey, Slezak, Tom, Lovell, Stephen, Schoepp, Randal, Scherf, Uwe
Published in Nat Commun (2019)