Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes

Por Gardner, Shea N, Slezak, Tom
Publicado no BMC Bioinformatics (2014)

Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays

Por Gardner, Shea N, Wagner, Mark C
Publicado em 2005

Predicting the sensitivity and specificity of published real-time PCR assays

Por Lemmon, Gordon H, Gardner, Shea N
Publicado em 2008

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

Por Gardner, Shea N., Hall, Barry G.
Publicado em 2013

DNA signatures for detecting genetic engineering in bacteria

Por Allen, Jonathan E, Gardner, Shea N, Slezak, Tom R
Publicado em 2008

Identification of SNPs associated with variola virus virulence

Por Hoen, Anne Gatewood, Gardner, Shea N, Moore, Jason H
Publicado em 2013

Limitations of TaqMan PCR for Detecting Divergent Viral Pathogens Illustrated by Hepatitis A, B, C, and E Viruses and Human Immunodeficiency Virus

Por Gardner, Shea N., Kuczmarski, Thomas A., Vitalis, Elizabeth A., Slezak, Tom R.
Publicado em 2003

Conserved amino acid markers from past influenza pandemic strains

Por Allen, Jonathan E, Gardner, Shea N, Vitalis, Elizabeth A, Slezak, Tom R
Publicado em 2009

A microbial detection array (MDA) for viral and bacterial detection

Por Gardner, Shea N, Jaing, Crystal J, McLoughlin, Kevin S, Slezak, Tom R
Publicado em 2010

System To Assess Genome Sequencing Needs for Viral Protein Diagnostics and Therapeutics

Por Gardner, Shea N., Kuczmarski, Thomas A., Zhou, Carol E., Lam, Marisa W., Slezak, Tom R.
Publicado em 2005

Draft versus finished sequence data for DNA and protein diagnostic signature development

Por Gardner, Shea N., Lam, Marisa W., Smith, Jason R., Torres, Clinton L., Slezak, Tom R.
Publicado em 2005

On the origin of smallpox: Correlating variola phylogenics with historical smallpox records

Por Li, Yu, Carroll, Darin S., Gardner, Shea N., Walsh, Matthew C., Vitalis, Elizabeth A., Damon, Inger K.
Publicado em 2007

LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures

Por Gardner Shea N, Baker Brian R, Vitalis Elizabeth A, Torres Clinton, Torres Marisa W, Dzenitis John M
Publicado em 2011-06-01

Multiplex primer prediction software for divergent targets

Por Gardner, Shea N., Hiddessen, Amy L., Williams, Peter L., Hara, Christine, Wagner, Mark C., Colston, Bill W.
Publicado em 2009

LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures

Por Torres, Clinton, Vitalis, Elizabeth A, Baker, Brian R, Gardner, Shea N, Torres, Marisa W, Dzenitis, John M
Publicado em 2011

Skip the Alignment: Degenerate, Multiplex Primer and Probe Design Using K-mer Matching Instead of Alignments

Por Hysom, David A., Naraghi-Arani, Pejman, Elsheikh, Maher, Carrillo, A. Celena, Williams, Peter L., Gardner, Shea N.
Publicado em 2012

Screening of Viral Pathogens from Pediatric Ileal Tissue Samples after Vaccination

Por Hewitson, Laura, Thissen, James B., Gardner, Shea N., McLoughlin, Kevin S., Glausser, Margaret K., Jaing, Crystal J.
Publicado em 2014

Multiplex Degenerate Primer Design for Targeted Whole Genome Amplification of Many Viral Genomes

Por Gardner, Shea N., Jaing, Crystal J., Elsheikh, Maher M., Peña, José, Hysom, David A., Borucki, Monica K.
Publicado em 2014

Sequencing Needs for Viral Diagnostics

Por Gardner, Shea N., Lam, Marisa W., Mulakken, Nisha J., Torres, Clinton L., Smith, Jason R., Slezak, Tom R.
Publicado em 2004

Scalable metagenomic taxonomy classification using a reference genome database

Por Ames, Sasha K., Hysom, David A., Gardner, Shea N., Lloyd, G. Scott, Gokhale, Maya B., Allen, Jonathan E.
Publicado em 2013