Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes

por Gardner, Shea N, Slezak, Tom
Publicado en BMC Bioinformatics (2014)

Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays

por Gardner, Shea N, Wagner, Mark C
Publicado 2005

Predicting the sensitivity and specificity of published real-time PCR assays

por Lemmon, Gordon H, Gardner, Shea N
Publicado 2008

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

por Gardner, Shea N., Hall, Barry G.
Publicado 2013

Detection of Homologous Recombination Events in Bacterial Genomes

por Wang, Wei-Bung, Jiang, Tao, Gardner, Shea
Publicado 2013

DNA signatures for detecting genetic engineering in bacteria

por Allen, Jonathan E, Gardner, Shea N, Slezak, Tom R
Publicado 2008

Identification of SNPs associated with variola virus virulence

por Hoen, Anne Gatewood, Gardner, Shea N, Moore, Jason H
Publicado 2013

Limitations of TaqMan PCR for Detecting Divergent Viral Pathogens Illustrated by Hepatitis A, B, C, and E Viruses and Human Immunodeficiency Virus

por Gardner, Shea N., Kuczmarski, Thomas A., Vitalis, Elizabeth A., Slezak, Tom R.
Publicado 2003

Conserved amino acid markers from past influenza pandemic strains

por Allen, Jonathan E, Gardner, Shea N, Vitalis, Elizabeth A, Slezak, Tom R
Publicado 2009

A microbial detection array (MDA) for viral and bacterial detection

por Gardner, Shea N, Jaing, Crystal J, McLoughlin, Kevin S, Slezak, Tom R
Publicado 2010

Design of Genomic Signatures for Pathogen Identification and Characterization

por Slezak, Tom, Gardner, Shea, Allen, Jonathan, Vitalis, Elizabeth, Torres, Marisa, Torres, Clinton, Jaing, Crystal
Publicado en Microbial Forensics (2011)

System To Assess Genome Sequencing Needs for Viral Protein Diagnostics and Therapeutics

por Gardner, Shea N., Kuczmarski, Thomas A., Zhou, Carol E., Lam, Marisa W., Slezak, Tom R.
Publicado 2005

Draft versus finished sequence data for DNA and protein diagnostic signature development

por Gardner, Shea N., Lam, Marisa W., Smith, Jason R., Torres, Clinton L., Slezak, Tom R.
Publicado 2005

On the origin of smallpox: Correlating variola phylogenics with historical smallpox records

por Li, Yu, Carroll, Darin S., Gardner, Shea N., Walsh, Matthew C., Vitalis, Elizabeth A., Damon, Inger K.
Publicado 2007

LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures

por Gardner Shea N, Baker Brian R, Vitalis Elizabeth A, Torres Clinton, Torres Marisa W, Dzenitis John M
Publicado 2011-06-01

Multiplex primer prediction software for divergent targets

por Gardner, Shea N., Hiddessen, Amy L., Williams, Peter L., Hara, Christine, Wagner, Mark C., Colston, Bill W.
Publicado 2009

Viral Nucleic Acids in Live-Attenuated Vaccines: Detection of Minority Variants and an Adventitious Virus

por Victoria, Joseph G., Wang, Chunlin, Jones, Morris S., Jaing, Crystal, McLoughlin, Kevin, Gardner, Shea, Delwart, Eric L.
Publicado 2010

LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures

por Torres, Clinton, Vitalis, Elizabeth A, Baker, Brian R, Gardner, Shea N, Torres, Marisa W, Dzenitis, John M
Publicado 2011

Skip the Alignment: Degenerate, Multiplex Primer and Probe Design Using K-mer Matching Instead of Alignments

por Hysom, David A., Naraghi-Arani, Pejman, Elsheikh, Maher, Carrillo, A. Celena, Williams, Peter L., Gardner, Shea N.
Publicado 2012

Screening of Viral Pathogens from Pediatric Ileal Tissue Samples after Vaccination

por Hewitson, Laura, Thissen, James B., Gardner, Shea N., McLoughlin, Kevin S., Glausser, Margaret K., Jaing, Crystal J.
Publicado 2014