Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis

Por Frühwirth, Rudolf, Mani, D R, Pyne, Saumyadipta
Publicado em 2011

Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics

Por Mani, D R, Abbatiello, Susan E, Carr, Steven A
Publicado em 2012

Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry

Por Abbatiello, Susan E., Mani, D. R., Keshishian, Hasmik, Carr, Steven A.
Publicado em 2009

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

Por Fusaro, Vincent A, Mani, D R, Mesirov, Jill P, Carr, Steven A
Publicado em 2009

Transitioning from Targeted to Comprehensive Mass Spectrometry using Genetic Algorithms

Por Jaffe, Jacob D., Feeney, Caitlin M., Patel, Jinal, Lu, Xiaodong, Mani, D. R.
Publicado no J Am Soc Mass Spectrom (2016)

Simplified and Efficient Quantification of Low-abundance Proteins at Very High Multiplex via Targeted Mass Spectrometry

Por Burgess, Michael W., Keshishian, Hasmik, Mani, D. R., Gillette, Michael A., Carr, Steven A.
Publicado em 2014

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression

Por Naba, Alexandra, Clauser, Karl R., Mani, D. R., Carr, Steven A., Hynes, Richard O.
Publicado no Sci Rep (2017)

PEPPeR: A Platform for Experimental Proteomic Pattern Recognition

Por Jaffe, Jacob D., Mani, D. R., Leptos, Kyriacos C., Church, George M., Gillette, Michael A., Carr, Steven A.
Publicado em 2009

Refined Preparation and Use of Anti-diglycine Remnant (K-ε-GG) Antibody Enables Routine Quantification of 10,000s of Ubiquitination Sites in Single Proteomics Experiments

Por Udeshi, Namrata D., Svinkina, Tanya, Mertins, Philipp, Kuhn, Eric, Mani, D. R., Qiao, Jana W., Carr, Steven A.
Publicado em 2013

Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution

Por Keshishian, Hasmik, Addona, Terri, Burgess, Michael, Mani, D. R., Shi, Xu, Kuhn, Eric, Sabatine, Marc S., Gerszten, Robert E., Carr, Steven A.
Publicado em 2009

Developing Multiplexed Assays for Troponin I and Interleukin-33 in Plasma by Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry

Por Kuhn, Eric, Addona, Terri, Keshishian, Hasmik, Burgess, Michael, Mani, D.R., Lee, Richard T., Sabatine, Marc S., Gerszten, Robert E., Carr, Steven A.
Publicado em 2009

Methods for Quantification of in vivo Changes in Protein Ubiquitination following Proteasome and Deubiquitinase Inhibition

Por Udeshi, Namrata D., Mani, D. R., Eisenhaure, Thomas, Mertins, Philipp, Jaffe, Jacob D., Clauser, Karl R., Hacohen, Nir, Carr, Steven A.
Publicado em 2012

Methods, Tools and Current Perspectives in Proteogenomics

Por Ruggles, Kelly V., Krug, Karsten, Wang, Xiaojing, Clauser, Karl R., Wang, Jing, Payne, Samuel H., Fenyö, David, Zhang, Bing, Mani, D. R.
Publicado no Mol Cell Proteomics (2017)

Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells

Por Tian, Chenxi, Clauser, Karl R., Öhlund, Daniel, Rickelt, Steffen, Huang, Ying, Gupta, Mala, Mani, D. R., Carr, Steven A., Tuveson, David A., Hynes, Richard O.
Publicado no Proc Natl Acad Sci U S A (2019)

Integrated proteomic analysis of post-translational modifications by serial enrichment

Por Mertins, Philipp, Qiao, Jana W, Patel, Jinal, Udeshi, Namrata D, Clauser, Karl R, Mani, D R, Burgess, Michael W, Gillette, Michael A, Jaffe, Jacob D, Carr, Steven A
Publicado em 2013

Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury

Por Keshishian, Hasmik, Burgess, Michael W., Gillette, Michael A., Mertins, Philipp, Clauser, Karl R., Mani, D. R., Kuhn, Eric W., Farrell, Laurie A., Gerszten, Robert E., Carr, Steven A.
Publicado no Mol Cell Proteomics (2015)

Identification of apolipoprotein D as a cardioprotective gene using a mouse model of lethal atherosclerotic coronary artery disease

Por Tsukamoto, Kosuke, Mani, D. R., Shi, Jianru, Zhang, Songwen, Haagensen, Darrow E., Otsuka, Fumiyuki, Guan, Jian, Smith, Jonathan D., Weng, Wei, Liao, Ronglih, Kolodgie, Frank D., Virmani, Renu, Krieger, Monty
Publicado em 2013

Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells

Por Myers, Samuel A., Rhoads, Andrew, Cocco, Alexandra R., Peckner, Ryan, Haber, Adam L., Schweitzer, Lawrence D., Krug, Karsten, Mani, D. R., Clauser, Karl R., Rozenblatt-Rosen, Orit, Hacohen, Nir, Regev, Aviv, Carr, Steven A.
Publicado no Mol Cell Proteomics (2019)

Interlaboratory Evaluation of Automated, Multiplexed Peptide Immunoaffinity Enrichment Coupled to Multiple Reaction Monitoring Mass Spectrometry for Quantifying Proteins in Plasma

Por Kuhn, Eric, Whiteaker, Jeffrey R., Mani, D. R., Jackson, Angela M., Zhao, Lei, Pope, Matthew E., Smith, Derek, Rivera, Keith D., Anderson, N. Leigh, Skates, Steven J., Pearson, Terry W., Paulovich, Amanda G., Carr, Steven A.
Publicado em 2012

A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease

Por Addona, Terri A, Shi, Xu, Keshishian, Hasmik, Mani, D R, Burgess, Michael, Gillette, Michael A, Clauser, Karl R, Shen, Dongxiao, Lewis, Gregory D, Farrell, Laurie A, Fifer, Michael A, Sabatine, Marc S, Gerszten, Robert E, Carr, Steven A
Publicado em 2011