Differential evolution of a CXCR4-using HIV-1 strain in CCR5wt/wt and CCR5∆32/∆32 hosts revealed by longitudinal deep sequencing and phylogenetic reconstruction

Por Le, Anh Q., Taylor, Jeremy, Dong, Winnie, McCloskey, Rosemary, Woods, Conan, Danroth, Ryan, Hayashi, Kanna, Milloy, M.-J., Poon, Art F. Y., Brumme, Zabrina L.
Publicado no Sci Rep (2015)

Host-Specific Adaptation of HIV-1 Subtype B in the Japanese Population

Por Chikata, Takayuki, Carlson, Jonathan M., Tamura, Yoshiko, Borghan, Mohamed Ali, Naruto, Takuya, Hashimoto, Masao, Murakoshi, Hayato, Le, Anh Q., Mallal, Simon, John, Mina, Gatanaga, Hiroyuki, Oka, Shinichi, Brumme, Zabrina L., Takiguchi, Masafumi
Publicado em 2014

Early immune adaptation in HIV-1 revealed by population-level approaches

Por Martin, Eric, Carlson, Jonathan M, Le, Anh Q, Chopera, Denis R, McGovern, Rachel, Rahman, Manal A, Ng, Carmond, Jessen, Heiko, Kelleher, Anthony D, Markowitz, Martin, Allen, Todd M, Milloy, M-J, Carrington, Mary, Wainberg, Mark A, Brumme, Zabrina L
Publicado em 2014

Nef-mediated down-regulation of CD4 and HLA class I in HIV-1 subtype C infection: association with disease progression and influence of immune pressure

Por Mann, Jaclyn K., Chopera, Denis, Omarjee, Saleha, Kuang, Xiaomei T., Le, Anh Q., Anmole, Gursev, Danroth, Ryan, Mwimanzi, Philip, Reddy, Tarylee, Carlson, Jonathan, Radebe, Mopo, Goulder, Philip J.R., Walker, Bruce D., Karim, Salim Abdool, Novitsky, Vladimir, Williamson, Carolyn, Brockman, Mark A., Brumme, Zabrina L., Ndung’u, Thumbi
Publicado no Virology (2014)

Impaired Nef Function Is Associated with Early Control of HIV-1 Viremia

Por Kuang, Xiaomei T., Li, Xiaoguang, Anmole, Gursev, Mwimanzi, Philip, Shahid, Aniqa, Le, Anh Q., Chong, Louise, Qian, Hua, Miura, Toshiyuki, Markle, Tristan, Baraki, Bemuluyigza, Connick, Elizabeth, Daar, Eric S., Jessen, Heiko, Kelleher, Anthony D., Little, Susan, Markowitz, Martin, Pereyra, Florencia, Rosenberg, Eric S., Walker, Bruce D., Ueno, Takamasa, Brumme, Zabrina L., Brockman, Mark A.
Publicado em 2014

Population-Level Immune-Mediated Adaptation in HIV-1 Polymerase during the North American Epidemic

Por Kinloch, Natalie N., MacMillan, Daniel R., Le, Anh Q., Cotton, Laura A., Bangsberg, David R., Buchbinder, Susan, Carrington, Mary, Fuchs, Jonathan, Harrigan, P. Richard, Koblin, Beryl, Kushel, Margot, Markowitz, Martin, Mayer, Kenneth, Milloy, M. J., Schechter, Martin T., Wagner, Theresa, Walker, Bruce D., Carlson, Jonathan M., Poon, Art F. Y., Brumme, Zabrina L.
Publicado no J Virol (2016)

Correlates of Protective Cellular Immunity Revealed by Analysis of Population-Level Immune Escape Pathways in HIV-1

Por Carlson, Jonathan M., Brumme, Chanson J., Martin, Eric, Listgarten, Jennifer, Brockman, Mark A., Le, Anh Q., Chui, Celia K. S., Cotton, Laura A., Knapp, David J. H. F., Riddler, Sharon A., Haubrich, Richard, Nelson, George, Pfeifer, Nico, DeZiel, Charles E., Heckerman, David, Apps, Richard, Carrington, Mary, Mallal, Simon, Harrigan, P. Richard, John, Mina, Brumme, Zabrina L.
Publicado em 2012

Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes

Por Mann, Jaclyn K, Byakwaga, Helen, Kuang, Xiaomei T, Le, Anh Q, Brumme, Chanson J, Mwimanzi, Philip, Omarjee, Saleha, Martin, Eric, Lee, Guinevere Q, Baraki, Bemuluyigza, Danroth, Ryan, McCloskey, Rosemary, Muzoora, Conrad, Bangsberg, David R, Hunt, Peter W, Goulder, Philip JR, Walker, Bruce D, Harrigan, P Richard, Martin, Jeff N, Ndung’u, Thumbi, Brockman, Mark A, Brumme, Zabrina L
Publicado em 2013

Uncommon Pathways of Immune Escape Attenuate HIV-1 Integrase Replication Capacity

Por Brockman, Mark A., Chopera, Denis R., Olvera, Alex, Brumme, Chanson J., Sela, Jennifer, Markle, Tristan J., Martin, Eric, Carlson, Jonathan M., Le, Anh Q., McGovern, Rachel, Cheung, Peter K., Kelleher, Anthony D., Jessen, Heiko, Markowitz, Martin, Rosenberg, Eric, Frahm, Nicole, Sanchez, Jorge, Mallal, Simon, John, Mina, Harrigan, P. Richard, Heckerman, David, Brander, Christian, Walker, Bruce D., Brumme, Zabrina L.
Publicado em 2012

Genotypic and Functional Impact of HIV-1 Adaptation to Its Host Population during the North American Epidemic

Por Cotton, Laura A., Kuang, Xiaomei T., Le, Anh Q., Carlson, Jonathan M., Chan, Benjamin, Chopera, Denis R., Brumme, Chanson J., Markle, Tristan J., Martin, Eric, Shahid, Aniqa, Anmole, Gursev, Mwimanzi, Philip, Nassab, Pauline, Penney, Kali A., Rahman, Manal A., Milloy, M.-J., Schechter, Martin T., Markowitz, Martin, Carrington, Mary, Walker, Bruce D., Wagner, Theresa, Buchbinder, Susan, Fuchs, Jonathan, Koblin, Beryl, Mayer, Kenneth H., Harrigan, P. Richard, Brockman, Mark A., Poon, Art F. Y., Brumme, Zabrina L.
Publicado em 2014