Phylodynamic Inference with Kernel ABC and Its Application to HIV Epidemiology

Por Poon, Art F.Y.
Publicado no Mol Biol Evol (2015)

Impacts and shortcomings of genetic clustering methods for infectious disease outbreaks

Por Poon, Art F. Y.
Publicado no Virus Evol (2016)

A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation

Por McCloskey, Rosemary M., Poon, Art F. Y.
Publicado no PLoS Comput Biol (2017)

Global Database-Driven Assessment of HIV-1 Adaptation to the Immune Repertoires of Human Populations

Por Karakas, Aram, Brumme, Zabrina L., Poon, Art F. Y.
Publicado no J Virol (2015)

Compensatory mutations are repeatable and clustered within proteins

Por Davis, Brad H., Poon, Art F.Y., Whitlock, Michael C.
Publicado em 2009

HIV-1 Nef Protein Structures Associated with Brain Infection and Dementia Pathogenesis

Por Lamers, Susanna L., Poon, Art F. Y., McGrath, Michael S.
Publicado em 2011

Selection in Coastal Synechococcus (Cyanobacteria) Populations Evaluated from Environmental Metagenomes

Por Tai, Vera, Poon, Art F. Y., Paulsen, Ian T., Palenik, Brian
Publicado em 2011

Reconstructing contact network parameters from viral phylogenies

Por McCloskey, Rosemary M., Liang, Richard H., Poon, Art F.Y.
Publicado no Virus Evol (2016)

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

Por Delport, Wayne, Poon, Art F. Y., Frost, Simon D. W., Kosakovsky Pond, Sergei L.
Publicado em 2010

Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope

Por Poon, Art F. Y, Lewis, Fraser I, Pond, Sergei L. Kosakovsky, Frost, Simon D. W
Publicado em 2007

An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope

Por Poon, Art F. Y, Lewis, Fraser I, Pond, Sergei L. Kosakovsky, Frost, Simon D. W
Publicado em 2007

Mapping Protease Inhibitor Resistance to Human Immunodeficiency Virus Type 1 Sequence Polymorphisms within Patients

Por Poon, Art F. Y., Kosakovsky Pond, Sergei L., Richman, Douglas D., Frost, Simon D. W.
Publicado em 2007

Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models

Por Poon, Art F. Y., Lewis, Fraser I., Frost, Simon D. W., Kosakovsky Pond, Sergei L.
Publicado em 2008

Ancestral Reconstruction

Por Joy, Jeffrey B., Liang, Richard H., McCloskey, Rosemary M., Nguyen, T., Poon, Art F. Y.
Publicado no PLoS Comput Biol (2016)

A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and Its Application to Influenza A Virus

Por Kosakovsky Pond, Sergei L., Poon, Art F.Y., Leigh Brown, Andrew J., Frost, Simon D.W.
Publicado em 2008

Evolutionary Fingerprinting of Genes

Por Kosakovsky Pond, Sergei L., Scheffler, Konrad, Gravenor, Michael B., Poon, Art F.Y., Frost, Simon D.W.
Publicado em 2010

An Evaluation of Phylogenetic Methods for Reconstructing Transmitted HIV Variants using Longitudinal Clonal HIV Sequence Data

Por McCloskey, Rosemary M., Liang, Richard H., Harrigan, P. Richard, Brumme, Zabrina L., Poon, Art F. Y.
Publicado em 2014

Replication Fitness of Multiple Nonnucleoside Reverse Transcriptase-Resistant HIV-1 Variants in the Presence of Etravirine Measured by 454 Deep Sequencing

Por Brumme, Chanson J., Huber, Kelly D., Dong, Winnie, Poon, Art F. Y., Harrigan, P. Richard, Sluis-Cremer, Nicolas
Publicado em 2013

Mapping the Shapes of Phylogenetic Trees from Human and Zoonotic RNA Viruses

Por Poon, Art F. Y., Walker, Lorne W., Murray, Heather, McCloskey, Rosemary M., Harrigan, P. Richard, Liang, Richard H.
Publicado em 2013

In Vitro Selection of Clinically Relevant Bevirimat Resistance Mutations Revealed by “Deep” Sequencing of Serially Passaged, Quasispecies-Containing Recombinant HIV-1

Por Knapp, David J. H. F., Harrigan, P. Richard, Poon, Art F. Y., Brumme, Zabrina L., Brockman, Mark, Cheung, Peter K.
Publicado em 2011