Review: influence of ART on HIV genetics

بواسطة Simonetti, Francesco R., Kearney, Mary F.
الحاوية / القاعدة Curr Opin HIV AIDS (2015)

Review: HIV-1 Phylogeny during Suppressive Antiretroviral Therapy

بواسطة Bale, Michael J., Kearney, Mary F.
الحاوية / القاعدة Curr Opin HIV AIDS (2019)

HIV evolution and diversity in ART-treated patients

بواسطة van Zyl, Gert, Bale, Michael J., Kearney, Mary F.
الحاوية / القاعدة Retrovirology (2018)

HIV-1 Persistence in Children during Suppressive ART

بواسطة Katusiime, Mary Grace, Van Zyl, Gert U., Cotton, Mark F., Kearney, Mary F.
الحاوية / القاعدة Viruses (2021)

Low genetic diversity may be an Achilles heel of SARS-CoV-2

بواسطة Rausch, Jason W., Capoferri, Adam A., Katusiime, Mary Grace, Patro, Sean C., Kearney, Mary F.
الحاوية / القاعدة Proc Natl Acad Sci U S A (2020)

Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection

بواسطة Batorsky, Rebecca, Kearney, Mary F., Palmer, Sarah E., Maldarelli, Frank, Rouzine, Igor M., Coffin, John M.
منشور في 2011

2020 SARS-CoV-2 diversification in the United States: Establishing a pre-vaccination baseline

بواسطة Capoferri, Adam A., Shao, Wei, Spindler, Jon, Coffin, John M., Rausch, Jason W., Kearney, Mary F.
الحاوية / القاعدة medRxiv (2021)

A12 Modeling residual HIV replication and the emergence of drug resistance on ART

بواسطة Michael Bale, J, Valerie Boltz, F, Mellors, John W, Coffin, John M, Hughes, Stephen H, Kearney, Mary F
الحاوية / القاعدة Virus Evol (2019)

Short Communication: HIV-DRLink: A Tool for Reporting Linked HIV-1 Drug Resistance Mutations in Large Single-Genome Data Sets Using the Stanford HIV Database

بواسطة Shao, Wei, Boltz, Valerie F., Hattori, Junko, Bale, Michael J., Maldarelli, Frank, Coffin, John M., Kearney, Mary F.
الحاوية / القاعدة AIDS Res Hum Retroviruses (2020)

PAPNC, a novel method to calculate nucleotide diversity from large scale next generation sequencing data

بواسطة Shao, Wei, Kearney, Mary F., Boltz, Valerie F., Spindler, Jonathan E., Mellors, John W., Maldarelli, Frank, Coffin, John M.
منشور في 2014

HIV Proviral Sequence Database: A New Public Database for Near Full-Length HIV Proviral Sequences and Their Meta-Analyses

بواسطة Shao, Wei, Shan, Jigui, Hu, Wei-Shau, Halvas, Elias Konstantine, Mellors, John W., Coffin, John M., Kearney, Mary F.
الحاوية / القاعدة AIDS Res Hum Retroviruses (2020)

Mechanistic Analysis of the Broad Antiretroviral Resistance Conferred by HIV-1 Envelope Glycoprotein Mutations

بواسطة Hikichi, Yuta, Van Duyne, Rachel, Pham, Phuong, Groebner, Jennifer L., Wiegand, Ann, Mellors, John W., Kearney, Mary F., Freed, Eric O.
الحاوية / القاعدة mBio (2021)

HIVIntact: a python-based tool for HIV-1 genome intactness inference

بواسطة Wright, Imogen A., Bale, Michael J., Shao, Wei, Hu, Wei-Shau, Coffin, John M., Van Zyl, Gert U., Kearney, Mary F.
الحاوية / القاعدة Retrovirology (2021)

Ultrasensitive Allele-Specific PCR Reveals Rare Preexisting Drug-Resistant Variants and a Large Replicating Virus Population in Macaques Infected with a Simian Immunodeficiency Vir...

بواسطة Boltz, Valerie F., Ambrose, Zandrea, Kearney, Mary F., Shao, Wei, KewalRamani, Vineet N., Maldarelli, Frank, Mellors, John W., Coffin, John M.
منشور في 2012

Limited Nucleotide Changes in the Rev Response Element (RRE) during HIV-1 Infection Alter Overall Rev-RRE Activity and Rev Multimerization

بواسطة Sloan, Emily A., Kearney, Mary F., Gray, Laurie R., Anastos, Kathryn, Daar, Eric S., Margolick, Joseph, Maldarelli, Frank, Hammarskjold, Marie-Louise, Rekosh, David
منشور في 2013

Retrovirus Integration Database (RID): a public database for retroviral insertion sites into host genomes

بواسطة Shao, Wei, Shan, Jigui, Kearney, Mary F., Wu, Xiaolin, Maldarelli, Frank, Mellors, John W., Luke, Brian, Coffin, John M., Hughes, Stephen H.
الحاوية / القاعدة Retrovirology (2016)

Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA

بواسطة Boltz, Valerie F., Rausch, Jason, Shao, Wei, Hattori, Junko, Luke, Brian, Maldarelli, Frank, Mellors, John W., Kearney, Mary F., Coffin, John M.
الحاوية / القاعدة Retrovirology (2016)

Origin of Rebound Plasma HIV Includes Cells with Identical Proviruses That Are Transcriptionally Active before Stopping of Antiretroviral Therapy

بواسطة Kearney, Mary F., Wiegand, Ann, Shao, Wei, Coffin, John M., Mellors, John W., Lederman, Michael, Gandhi, Rajesh T., Keele, Brandon F., Li, Jonathan Z.
الحاوية / القاعدة J Virol (2016)

Connection Subdomain Mutations in HIV-1 Subtype-C Treatment-Experienced Patients Enhance NRTI and NNRTI Drug Resistance

بواسطة Delviks-Frankenberry, Krista A., Lengruber, Renan B., Santos, Andre F., Silveira, Jussara M., Soares, Marcelo A., Kearney, Mary F., Maldarelli, Frank, Pathak, Vinay K.
منشور في 2012

Ongoing HIV Replication During ART Reconsidered

بواسطة Kearney, Mary F, Wiegand, Ann, Shao, Wei, McManus, William R, Bale, Michael J, Luke, Brian, Maldarelli, Frank, Mellors, John W, Coffin, John M
الحاوية / القاعدة Open Forum Infect Dis (2017)