Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus

Por Illingworth, Christopher J.R.
Publicado no Mol Biol Evol (2015)

Distinguishing Driver and Passenger Mutations in an Evolutionary History Categorized by Interference

Por Illingworth, Christopher J. R., Mustonen, Ville
Publicado em 2011

A method to infer positive selection from marker dynamics in an asexual population

Por Illingworth, Christopher J. R., Mustonen, Ville
Publicado em 2012

Components of Selection in the Evolution of the Influenza Virus: Linkage Effects Beat Inherent Selection

Por Illingworth, Christopher J. R., Mustonen, Ville
Publicado em 2012

Measurements of intrahost viral diversity require an unbiased diversity metric

Por Zhao, Lei, Illingworth, Christopher J R
Publicado no Virus Evol (2019)

Identifying Selection in the Within-Host Evolution of Influenza Using Viral Sequence Data

Por Illingworth, Christopher J. R., Fischer, Andrej, Mustonen, Ville
Publicado em 2014

Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model

Por Nené, Nuno R., Dunham, Alistair S., Illingworth, Christopher J. R.
Publicado no Genetics (2018)

Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection

Por Zhao, Lei, Abbasi, Ali B, Illingworth, Christopher J R
Publicado no Virus Evol (2019)

A novel framework for inferring parameters of transmission from viral sequence data

Por Lumby, Casper K., Nene, Nuno R., Illingworth, Christopher J. R.
Publicado no PLoS Genet (2018)

Building a mechanistic mathematical model of hepatitis C virus entry

Por Kalemera, Mphatso, Mincheva, Dilyana, Grove, Joe, Illingworth, Christopher J. R.
Publicado no PLoS Comput Biol (2019)

High-Definition Reconstruction of Clonal Composition in Cancer

Por Fischer, Andrej, Vázquez-García, Ignacio, Illingworth, Christopher J.R., Mustonen, Ville
Publicado em 2014

Inferring Genome-Wide Recombination Landscapes from Advanced Intercross Lines: Application to Yeast Crosses

Por Illingworth, Christopher J. R., Parts, Leopold, Bergström, Anders, Liti, Gianni, Mustonen, Ville
Publicado em 2013

Quantifying Selection Acting on a Complex Trait Using Allele Frequency Time Series Data

Por Illingworth, Christopher J.R., Parts, Leopold, Schiffels, Stephan, Liti, Gianni, Mustonen, Ville
Publicado em 2012

Addicted? Reduced host resistance in populations with defensive symbionts

Por Martinez, Julien, Cogni, Rodrigo, Cao, Chuan, Smith, Sophie, Illingworth, Christopher J. R., Jiggins, Francis M.
Publicado no Proc Biol Sci (2016)

On the effective depth of viral sequence data

Por Illingworth, Christopher J R, Roy, Sunando, Beale, Mathew A, Tutill, Helena, Williams, Rachel, Breuer, Judith
Publicado no Virus Evol (2017)

Assessing the effect of dynamics on the closed-loop protein-folding hypothesis

Por Chintapalli, Sree V., Illingworth, Christopher J. R., Upton, Graham J. G., Sacquin-Mora, Sophie, Reeves, Philip J., Mohammedali, Hani S., Reynolds, Christopher A.
Publicado em 2014

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

Por Reid, Adam J, Talman, Arthur M, Bennett, Hayley M, Gomes, Ana R, Sanders, Mandy J, Illingworth, Christopher J R, Billker, Oliver, Berriman, Matthew, Lawniczak, Mara KN
Publicado no eLife (2018)

High-Resolution Mapping of Complex Traits with a Four-Parent Advanced Intercross Yeast Population

Por Cubillos, Francisco A., Parts, Leopold, Salinas, Francisco, Bergström, Anders, Scovacricchi, Eugenio, Zia, Amin, Illingworth, Christopher J. R., Mustonen, Ville, Ibstedt, Sebastian, Warringer, Jonas, Louis, Edward J., Durbin, Richard, Liti, Gianni
Publicado em 2013

Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus

Por Doyle, Stephen R., Illingworth, Christopher J. R., Laing, Roz, Bartley, David J., Redman, Elizabeth, Martinelli, Axel, Holroyd, Nancy, Morrison, Alison A., Rezansoff, Andrew, Tracey, Alan, Devaney, Eileen, Berriman, Matthew, Sargison, Neil, Cotton, James A., Gilleard, John S.
Publicado no BMC Genomics (2019)

The effective rate of influenza reassortment is limited during human infection

Por Sobel Leonard, Ashley, McClain, Micah T., Smith, Gavin J. D., Wentworth, David E., Halpin, Rebecca A., Lin, Xudong, Ransier, Amy, Stockwell, Timothy B., Das, Suman R., Gilbert, Anthony S., Lambkin-Williams, Rob, Ginsburg, Geoffrey S., Woods, Christopher W., Koelle, Katia, Illingworth, Christopher J. R.
Publicado no PLoS Pathog (2017)