A high throughput lentivirus sieving assay identifies neutralization resistant Envelope sequences and predicts in vivo sieving

Por Iwamoto, Nami, Mason, Rosemarie, Hu, Jianfei, Ransier, Amy, Welles, Hugh, Song, Kaimei, Douek, Daniel, Roederer, Mario
Publicado no J Immunol Methods (2018)

Structure and Diversity of the Rhesus Macaque Immunoglobulin Loci through Multiple De Novo Genome Assemblies

Por Ramesh, Akshaya, Darko, Sam, Hua, Axin, Overman, Glenn, Ransier, Amy, Francica, Joseph R., Trama, Ashley, Tomaras, Georgia D., Haynes, Barton F., Douek, Daniel C., Kepler, Thomas B.
Publicado no Front Immunol (2017)

Epigenetic silencing of CD4 expression in nonpathogenic SIV infection in African green monkeys

Por Mudd, Joseph C., Lai, Stephen, Shah, Sanjana, Rahmberg, Andrew, Flynn, Jacob K., Starke, Carly E., Perkins, Molly R., Ransier, Amy, Darko, Sam, Douek, Daniel C., Hirsch, Vanessa M., Cameron, Mark, Brenchley, Jason M.
Publicado no JCI Insight (2020)

Isolation, propagation, genome analysis and epidemiology of HKU1 betacoronaviruses

Por Dominguez, Samuel R., Shrivastava, Susmita, Berglund, Andrew, Qian, Zhaohui, Góes, Luiz Gustavo Bentim, Halpin, Rebecca A., Fedorova, Nadia, Ransier, Amy, Weston, Philip A., Durigon, Edison Luiz, Jerez, José Antonio, Robinson, Christine C., Town, Christopher D., Holmes, Kathryn V.
Publicado em 2014

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification

Por Sobel Leonard, Ashley, McClain, Micah T., Smith, Gavin J. D., Wentworth, David E., Halpin, Rebecca A., Lin, Xudong, Ransier, Amy, Stockwell, Timothy B., Das, Suman R., Gilbert, Anthony S., Lambkin-Williams, Robert, Ginsburg, Geoffrey S., Woods, Christopher W., Koelle, Katia
Publicado no J Virol (2016)

T-cell receptor sequencing demonstrates persistence of virus-specific T cells after antiviral immunotherapy

Por Keller, Michael D., Darko, Sam, Lang, Haili, Ransier, Amy, Lazarski, Christopher A., Wang, Yunfei, Hanley, Patrick J., Davila, Blachy J., Heimall, Jennifer R., Ambinder, Richard F., Barrett, A. John, Rooney, Cliona M, Heslop, Helen E, Douek, Daniel C., Bollard, Catherine M.
Publicado no Br J Haematol (2019)

The effective rate of influenza reassortment is limited during human infection

Por Sobel Leonard, Ashley, McClain, Micah T., Smith, Gavin J. D., Wentworth, David E., Halpin, Rebecca A., Lin, Xudong, Ransier, Amy, Stockwell, Timothy B., Das, Suman R., Gilbert, Anthony S., Lambkin-Williams, Rob, Ginsburg, Geoffrey S., Woods, Christopher W., Koelle, Katia, Illingworth, Christopher J. R.
Publicado no PLoS Pathog (2017)

Characterization of the Neutralizing Antibody Response in a Case of Genetically Linked HIV Superinfection

Por Ssemwanga, Deogratius, Doria-Rose, Nicole A, Redd, Andrew D, Shiakolas, Andrea R, Longosz, Andrew F, Nsubuga, Rebecca N, Mayanja, Billy N, Asiki, Gershim, Seeley, Janet, Kamali, Anatoli, Ransier, Amy, Darko, Samuel, Walker, Michael P, Bruno, Daniel, Martens, Craig, Douek, Daniel, Porcella, Stephen F, Quinn, Thomas C, Mascola, John R, Kaleebu, Pontiano
Publicado no J Infect Dis (2018)

Type I IFN signaling blockade by a PASylated antagonist during chronic SIV infection suppresses specific inflammatory pathways but does not alter T cell activation or virus replica...

Por Nganou-Makamdop, Krystelle, Billingsley, James M., Yaffe, Zachary, O’Connor, Gregory, Tharp, Gregory K., Ransier, Amy, Laboune, Farida, Matus-Nicodemos, Rodrigo, Lerner, Andrea, Gharu, Lavina, Robertson, Jennifer M., Ford, Mandy L., Schlapschy, Martin, Kuhn, Nadine, Lensch, Alexandra, Lifson, Jeffrey, Nason, Martha, Skerra, Arne, Schreiber, Gideon, Bosinger, Steven E., Douek, Daniel C.
Publicado no PLoS Pathog (2018)

Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data

Por Lewis, Nicola S., Verhagen, Josanne H., Javakhishvili, Zurab, Russell, Colin A., Lexmond, Pascal, Westgeest, Kim B., Bestebroer, Theo M., Halpin, Rebecca A., Lin, Xudong, Ransier, Amy, Fedorova, Nadia B., Stockwell, Timothy B., Latorre-Margalef, Neus, Olsen, Björn, Smith, Gavin, Bahl, Justin, Wentworth, David E., Waldenström, Jonas, Fouchier, Ron A. M., de Graaf, Miranda
Publicado no J Gen Virol (2015)

Multiple Origins of Virus Persistence during Natural Control of HIV Infection

Por Boritz, Eli, Darko, Samuel, Swaszek, Luke, Wolf, Gideon, Wells, David, Wu, Xiaolin, Ransier, Amy, Laboune, Farida, Hu, Jianfei, Ambrozak, David, Hughes, Marybeth, Hoh, Rebecca, Casazza, Joseph, Vostal, Alexander, Bunis, Daniel, Nganou-Makamdop, Krystelle, Lee, James S., Migueles, Stephen, Koup, Richard, Connors, Mark, Moir, Susan, Schacker, Timothy, Maldarelli, Frank, Hughes, Stephen H., Deeks, Steven, Douek, Daniel
Publicado no Cell (2016)

Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem

Por Venkatesh, Divya, Poen, Marjolein J., Bestebroer, Theo M., Scheuer, Rachel D., Vuong, Oanh, Chkhaidze, Mzia, Machablishvili, Anna, Mamuchadze, Jimsher, Ninua, Levan, Fedorova, Nadia B., Halpin, Rebecca A., Lin, Xudong, Ransier, Amy, Stockwell, Timothy B., Wentworth, David E., Kriti, Divya, Dutta, Jayeeta, van Bakel, Harm, Puranik, Anita, Slomka, Marek J., Essen, Steve, Brown, Ian H., Fouchier, Ron A. M., Lewis, Nicola S.
Publicado no J Virol (2018)

A30 Avian influenza viruses in wild birds: Virus evolution in a multi-host ecosystem

Por Venkatesh, Divya, Poen, Marjolein J, Bestebroer, Theo M, Scheuer, Rachel D, Vuong, Oanh, Chkhaidze, Mzia, Machablishvili, Anna, Mamuchadze, Jimsher, Ninua, Levan, Fedorova, Nadia B, Halpin, Rebecca A, Lin, Xudong, Ransier, Amy, Stockwell, Timothy B, Wentworth, David E, Kriti, Divya, Dutta, Jayeeta, van Bakel, Harm, Puranik, Anita, Slomka, Marek J, Essen, Steve, Brown, Ian H, Fouchier, Ron A M, Lewis, Nicola S
Publicado no Virus Evol (2019)

CD8(+) T cells in lymphoid tissues exhibit distinct functional and transcriptional signatures that associate with elite control of HIV

Por Nguyen, Son, Deleage, Claire, Darko, Samuel, Ransier, Amy, Truong, Duc, Agarwal, Divyansh, Japp, Alberto Sada, Wu, Vincent H., Kuri-Cervantes, Leticia, Abdel-Mohsen, Mohamed, Del Rio Estrada, Perla M., Ablanedo-Terrazas, Yuria, Gostick, Emma, Hoxie, James A., Zhang, Nancy R., Naji, Ali, Reyes-Terán, Gustavo, Estes, Jacob D., Price, David A., Douek, Daniel C., Deeks, Steven G., Buggert, Marcus, Betts, Michael R.
Publicado no Sci Transl Med (2019)

Identification of a CD4-Binding-Site Antibody to HIV that Evolved Near-Pan Neutralization Breadth

Por Huang, Jinghe, Kang, Byong H., Ishida, Elise, Zhou, Tongqing, Griesman, Trevor, Sheng, Zizhang, Wu, Fan, Doria-Rose, Nicole A., Zhang, Baoshan, McKee, Krisha, O’Dell, Sijy, Chuang, Gwo-Yu, Druz, Aliaksandr, Georgiev, Ivelin S., Schramm, Chaim A., Zheng, Anqi, Joyce, M. Gordon, Asokan, Mangaiarkarasi, Ransier, Amy, Darko, Sam, Migueles, Stephen A., Bailer, Robert T., Louder, Mark K., Alam, S. Munir, Parks, Robert, Kelsoe, Garnett, Von Holle, Tarra, Haynes, Barton F., Douek, Daniel C., Hirsch, Vanessa, Seaman, Michael S., Shapiro, Lawrence, Mascola, John R., Kwong, Peter D., Connors, Mark
Publicado no Immunity (2016)

VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage

Por Shen, Chen-Hsiang, DeKosky, Brandon J., Guo, Yicheng, Xu, Kai, Gu, Ying, Kilam, Divya, Ko, Sung Hee, Kong, Rui, Liu, Kevin, Louder, Mark K., Ou, Li, Zhang, Baoshan, Chao, Cara W., Corcoran, Martin M., Feng, Eric, Huang, Jesse, Normandin, Erica, O’Dell, Sijy, Ransier, Amy, Rawi, Reda, Sastry, Mallika, Schmidt, Stephen D., Wang, Shuishu, Wang, Yiran, Chuang, Gwo-Yu, Doria-Rose, Nicole A., Lin, Bob, Zhou, Tongqing, Boritz, Eli A., Connors, Mark, Douek, Daniel C., Hedestam, Gunilla B. Karlsson, Sheng, Zizhang, Shapiro, Lawrence, Mascola, John R., Kwong, Peter D.
Publicado no Cell Host Microbe (2020)

Identification and characterization of HIV-specific resident memory CD8+ T cells in human lymphoid tissue

Por Buggert, Marcus, Nguyen, Son, de Oca, Gonzalo Salgado-Montes, Bengsch, Bertram, Darko, Samuel, Ransier, Amy, Roberts, Emily R., del Alcazar, Daniel, Brody, Irene Bukh, Vella, Laura A., Beura, Lalit, Wijeyesinghe, Sathi, Herati, Ramin S., Del Rio Estrada, Perla M., Ablanedo-Terrazas, Yuria, Kuri-Cervantes, Leticia, Sada Japp, Alberto, Manne, Sasikanth, Vartanian, Shant, Huffman, Austin, Sandberg, Johan K., Gostick, Emma, Nadolski, Gregory, Silvestri, Guido, Canaday, David H., Price, David A., Petrovas, Constantinos, Su, Laura F., Vahedi, Golnaz, Dori, Yoav, Frank, Ian, Itkin, Maxim G., Wherry, E. John, Deeks, Steven G., Naji, Ali, Reyes-Terán, Gustavo, Masopust, David, Douek, Daniel C., Betts, Michael R.
Publicado no Sci Immunol (2018)

Vaccine-Induced Antibodies that Neutralize Group 1 and 2 Influenza A Viruses

Por Joyce, M. Gordon, Wheatley, Adam K., Thomas, Paul V., Chuang, Gwo-Yu, Soto, Cinque, Bailer, Robert T., Druz, Aliaksandr, Georgiev, Ivelin S., Gillespie, Rebecca A., Kanekiyo, Masaru, Kong, Wing-Pui, Leung, Kwanyee, Narpala, Sandeep N., Prabhakaran, Madhu S., Yang, Eun Sung, Zhang, Baoshan, Zhang, Yi, Asokan, Mangaiarkarasi, Boyington, Jeffrey C., Bylund, Tatsiana, Darko, Sam, Lees, Christopher R., Ransier, Amy, Shen, Chen-Hsiang, Wang, Lingshu, Whittle, James R., Wu, Xueling, Yassine, Hadi M., Santos, Celia, Matsuoka, Yumiko, Tsybovsky, Yaroslav, Baxa, Ulrich, Mullikin, James C., Subbarao, Kanta, Douek, Daniel C., Graham, Barney S., Koup, Richard A., Ledgerwood, Julie E., Roederer, Mario, Shapiro, Lawrence, Kwong, Peter D., Mascola, John R., McDermott, Adrian B.
Publicado no Cell (2016)

Antibodies with potent and broad neutralizing activity against antigenically diverse and highly transmissible SARS-CoV-2 variants

Por Wang, Lingshu, Zhou, Tongqing, Zhang, Yi, Yang, Eun Sung, Schramm, Chaim A., Shi, Wei, Pegu, Amarendra, Oloninyi, Olamide K., Ransier, Amy, Darko, Samuel, Narpala, Sandeep R., Hatcher, Christian, Martinez, David R., Tsybovsky, Yaroslav, Phung, Emily, Abiona, Olubukola M., Cale, Evan M., Chang, Lauren A., Corbett, Kizzmekia S., DiPiazza, Anthony T., Gordon, Ingelise J., Leung, Kwanyee, Liu, Tracy, Mason, Rosemarie D., Nazzari, Alexandra, Novik, Laura, Olia, Adam S., Doria-Rose, Nicole A., Stephens, Tyler, Stringham, Christopher D., Talana, Chloe Adrienna, Teng, I-Ting, Wagner, Danielle, Widge, Alicia T., Zhang, Baoshan, Roederer, Mario, Ledgerwood, Julie E., Ruckwardt, Tracy J., Gaudinski, Martin R., Baric, Ralph S., Graham, Barney S., McDermott, Adrian B., Douek, Daniel C., Kwong, Peter D., Mascola, John R, Sullivan, Nancy J., Misasi, John
Publicado no bioRxiv (2021)

Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual

Por Krebs, Shelly J., Kwon, Young D., Schramm, Chaim A., Law, William H., Donofrio, Gina, Zhou, Kenneth H., Gift, Syna, Dussupt, Vincent, Georgiev, Ivelin S., Schätzle, Sebastian, McDaniel, Jonathan R., Lai, Yen-Ting, Sastry, Mallika, Zhang, Baoshan, Jarosinski, Marissa, Ransier, Amy, Chenine, Agnes L., Asokan, Mangaiarkarasi, Bailer, Robert T., Bose, Meera, Cagigi, Alberto, Cale, Evan M., Chuang, Gwo-Yu, Darko, Samuel, Driscoll, Jefferson I., Druz, Aliaksandr, Gorman, Jason, Laboune, Farida, Louder, Mark K., McKee, Krisha, Mendez, Letzibeth, Moody, M. Anthony, O’Sullivan, Anne Marie, Owen, Christopher, Peng, Dongjun, Rawi, Reda, Sanders-Buell, Eric, Shen, Chen-Hsiang, Shiakolas, Andrea R., Stephens, Tyler, Tsybovsky, Yaroslav, Tucker, Courtney, Veradi, Raffaello, Wang, Keyun, Zhou, Jing, Zhou, Tongqing, Georgiou, George, Alam, S. Munir, Haynes, Barton F., Rolland, Morgane, Matyas, Gary R., Polonis, Victoria R., McDermott, Adrian, Douek, Daniel C., Shapiro, Lawrence, Tovanabutra, Sodsai, Michael, Nelson L., Mascola, John R., Robb, Merlin L., Kwong, Peter D., Doria-Rose, Nicole A.
Publicado no Immunity (2019)