Illuminating Choices for Library Prep: A Comparison of Library Preparation Methods for Whole Genome Sequencing of Cryptococcus neoformans Using Illumina HiSeq

Por Rhodes, Johanna, Beale, Mathew A., Fisher, Matthew C.
Publicado no PLoS One (2014)

On the effective depth of viral sequence data

Por Illingworth, Christopher J R, Roy, Sunando, Beale, Mathew A, Tutill, Helena, Williams, Rachel, Breuer, Judith
Publicado no Virus Evol (2017)

Identification of novel adenovirus genotype 90 in children from Bangladesh

Por Houldcroft, Charlotte J., Beale, Mathew A., Sayeed, Md Abu, Qadri, Firdausi, Dougan, Gordon, Mutreja, Ankur
Publicado no Microb Genom (2018)

Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing

Por Abdolrasouli, Alireza, Rhodes, Johanna, Beale, Mathew A., Hagen, Ferry, Rogers, Thomas R., Chowdhary, Anuradha, Meis, Jacques F., Armstrong-James, Darius, Fisher, Matthew C.
Publicado no mBio (2015)

Erratum for Abdolrasouli et al., Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing

Por Abdolrasouli, Alireza, Rhodes, Johanna, Beale, Mathew A., Hagen, Ferry, Rogers, Thomas R., Chowdhary, Anuradha, Meis, Jacques F., Armstrong-James, Darius, Fisher, Matthew C.
Publicado no mBio (2015)

Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses

Por Lassalle, Florent, Beale, Mathew A, Bharucha, Tehmina, Williams, Charlotte A, Williams, Rachel J, Cudini, Juliana, Goldstein, Richard, Haque, Tanzina, Depledge, Daniel P, Breuer, Judith
Publicado no Virus Evol (2020)

Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages

Por Beale, Mathew A., Marks, Michael, Sahi, Sharon K., Tantalo, Lauren C., Nori, Achyuta V., French, Patrick, Lukehart, Sheila A., Marra, Christina M., Thomson, Nicholas R.
Publicado no Nat Commun (2019)

A Population Genomics Approach to Assessing the Genetic Basis of Within-Host Microevolution Underlying Recurrent Cryptococcal Meningitis Infection

Por Rhodes, Johanna, Beale, Mathew A., Vanhove, Mathieu, Jarvis, Joseph N., Kannambath, Shichina, Simpson, John A., Ryan, Anthea, Meintjes, Graeme, Harrison, Thomas S., Fisher, Matthew C., Bicanic, Tihana
Publicado no G3 (Bethesda) (2017)

Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African HIV/AIDS cohort

Por Vanhove, Mathieu, Beale, Mathew A., Rhodes, Johanna, Chanda, Duncan, Lakhi, Shabir, Kwenda, Geoffrey, Molloy, Sile, Karunaharan, Natasha, Stone, Neil, Harrison, Thomas S., Bicanic, Tihana, Fisher, Matthew C.
Publicado no Mol Ecol (2016)

Efficient phagocytosis and laccase activity affect the outcome of HIV-associated cryptococcosis

Por Sabiiti, Wilber, Robertson, Emma, Beale, Mathew A., Johnston, Simon A., Brouwer, Annemarie E., Loyse, Angela, Jarvis, Joseph N., Gilbert, Andrew S., Fisher, Matthew C., Harrison, Thomas S., May, Robin C., Bicanic, Tihana
Publicado em 2014

Genotypic Diversity Is Associated with Clinical Outcome and Phenotype in Cryptococcal Meningitis across Southern Africa

Por Beale, Mathew A., Sabiiti, Wilber, Robertson, Emma J., Fuentes-Cabrejo, Karen M., O’Hanlon, Simon J., Jarvis, Joseph N., Loyse, Angela, Meintjes, Graeme, Harrison, Thomas S., May, Robin C., Fisher, Matthew C., Bicanic, Tihana
Publicado no PLoS Negl Trop Dis (2015)

Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level

Por Rhodes, Johanna, Desjardins, Christopher A., Sykes, Sean M., Beale, Mathew A., Vanhove, Mathieu, Sakthikumar, Sharadha, Chen, Yuan, Gujja, Sharvari, Saif, Sakina, Chowdhary, Anuradha, Lawson, Daniel John, Ponzio, Vinicius, Colombo, Arnaldo Lopes, Meyer, Wieland, Engelthaler, David M., Hagen, Ferry, Illnait-Zaragozi, Maria Teresa, Alanio, Alexandre, Vreulink, Jo-Marie, Heitman, Joseph, Perfect, John R., Litvintseva, Anastasia P., Bicanic, Tihana, Harrison, Thomas S., Fisher, Matthew C., Cuomo, Christina A.
Publicado no Genetics (2017)