Illuminating Choices for Library Prep: A Comparison of Library Preparation Methods for Whole Genome Sequencing of Cryptococcus neoformans Using Illumina HiSeq

od Rhodes, Johanna, Beale, Mathew A., Fisher, Matthew C.
Wydane w PLoS One (2014)

Clinical and biological insights from viral genome sequencing

od Houldcroft, Charlotte J., Beale, Mathew A., Breuer, Judith
Wydane w Nat Rev Microbiol (2017)

On the effective depth of viral sequence data

od Illingworth, Christopher J R, Roy, Sunando, Beale, Mathew A, Tutill, Helena, Williams, Rachel, Breuer, Judith
Wydane w Virus Evol (2017)

Identification of novel adenovirus genotype 90 in children from Bangladesh

od Houldcroft, Charlotte J., Beale, Mathew A., Sayeed, Md Abu, Qadri, Firdausi, Dougan, Gordon, Mutreja, Ankur
Wydane w Microb Genom (2018)

Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing

od Abdolrasouli, Alireza, Rhodes, Johanna, Beale, Mathew A., Hagen, Ferry, Rogers, Thomas R., Chowdhary, Anuradha, Meis, Jacques F., Armstrong-James, Darius, Fisher, Matthew C.
Wydane w mBio (2015)

Erratum for Abdolrasouli et al., Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing

od Abdolrasouli, Alireza, Rhodes, Johanna, Beale, Mathew A., Hagen, Ferry, Rogers, Thomas R., Chowdhary, Anuradha, Meis, Jacques F., Armstrong-James, Darius, Fisher, Matthew C.
Wydane w mBio (2015)

Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses

od Lassalle, Florent, Beale, Mathew A, Bharucha, Tehmina, Williams, Charlotte A, Williams, Rachel J, Cudini, Juliana, Goldstein, Richard, Haque, Tanzina, Depledge, Daniel P, Breuer, Judith
Wydane w Virus Evol (2020)

Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages

od Beale, Mathew A., Marks, Michael, Sahi, Sharon K., Tantalo, Lauren C., Nori, Achyuta V., French, Patrick, Lukehart, Sheila A., Marra, Christina M., Thomson, Nicholas R.
Wydane w Nat Commun (2019)

A Population Genomics Approach to Assessing the Genetic Basis of Within-Host Microevolution Underlying Recurrent Cryptococcal Meningitis Infection

od Rhodes, Johanna, Beale, Mathew A., Vanhove, Mathieu, Jarvis, Joseph N., Kannambath, Shichina, Simpson, John A., Ryan, Anthea, Meintjes, Graeme, Harrison, Thomas S., Fisher, Matthew C., Bicanic, Tihana
Wydane w G3 (Bethesda) (2017)

Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African HIV/AIDS cohort

od Vanhove, Mathieu, Beale, Mathew A., Rhodes, Johanna, Chanda, Duncan, Lakhi, Shabir, Kwenda, Geoffrey, Molloy, Sile, Karunaharan, Natasha, Stone, Neil, Harrison, Thomas S., Bicanic, Tihana, Fisher, Matthew C.
Wydane w Mol Ecol (2016)

Efficient phagocytosis and laccase activity affect the outcome of HIV-associated cryptococcosis

od Sabiiti, Wilber, Robertson, Emma, Beale, Mathew A., Johnston, Simon A., Brouwer, Annemarie E., Loyse, Angela, Jarvis, Joseph N., Gilbert, Andrew S., Fisher, Matthew C., Harrison, Thomas S., May, Robin C., Bicanic, Tihana
Wydane 2014

Epidemiologic and Genomic Reidentification of Yaws, Liberia

od Timothy, Joseph W.S., Beale, Mathew A., Rogers, Emerson, Zaizay, Zeela, Halliday, Katherine E., Mulbah, Tarnue, Giddings, Romeo K., Walker, Stephen L., Thomson, Nicholas R., Kollie, Karsor K., Pullan, Rachel L., Marks, Michael
Wydane w Emerg Infect Dis (2021)

Genotypic Diversity Is Associated with Clinical Outcome and Phenotype in Cryptococcal Meningitis across Southern Africa

od Beale, Mathew A., Sabiiti, Wilber, Robertson, Emma J., Fuentes-Cabrejo, Karen M., O’Hanlon, Simon J., Jarvis, Joseph N., Loyse, Angela, Meintjes, Graeme, Harrison, Thomas S., May, Robin C., Fisher, Matthew C., Bicanic, Tihana
Wydane w PLoS Negl Trop Dis (2015)

A Trial of Three Rounds of Mass Drug Administration with Azithromycin for Yaws

od John, Lucy N., Beiras, Camila G., Houinei, Wendy, Medappa, Monica, Sabok, Maria, Kolmau, Reman, Jonathan, Eunice, Maika, Edward, Wangi, James K., Pospíšilová, Petra, Šmajs, David, Ouchi, Dan, Galván-Femenía, Iván, Beale, Mathew A, Giacani, Lorenzo, Clotet, Bonaventura, Mooring, Eric Q., Marks, Michael, Vall-Mayans, Marti, Mitjà, Oriol
Wydane w N Engl J Med (2022)

Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level

od Rhodes, Johanna, Desjardins, Christopher A., Sykes, Sean M., Beale, Mathew A., Vanhove, Mathieu, Sakthikumar, Sharadha, Chen, Yuan, Gujja, Sharvari, Saif, Sakina, Chowdhary, Anuradha, Lawson, Daniel John, Ponzio, Vinicius, Colombo, Arnaldo Lopes, Meyer, Wieland, Engelthaler, David M., Hagen, Ferry, Illnait-Zaragozi, Maria Teresa, Alanio, Alexandre, Vreulink, Jo-Marie, Heitman, Joseph, Perfect, John R., Litvintseva, Anastasia P., Bicanic, Tihana, Harrison, Thomas S., Fisher, Matthew C., Cuomo, Christina A.
Wydane w Genetics (2017)

Genomic epidemiology of COVID-19 in care homes in the east of England

od Hamilton, William L, Tonkin-Hill, Gerry, Smith, Emily R, Aggarwal, Dinesh, Houldcroft, Charlotte J, Warne, Ben, Meredith, Luke W, Hosmillo, Myra, Jahun, Aminu S, Curran, Martin D, Parmar, Surendra, Caller, Laura G, Caddy, Sarah L, Khokhar, Fahad A, Yakovleva, Anna, Hall, Grant, Feltwell, Theresa, Pinckert, Malte L, Georgana, Iliana, Chaudhry, Yasmin, Brown, Colin S, Gonçalves, Sonia, Amato, Roberto, Harrison, Ewan M, Brown, Nicholas M, Beale, Mathew A, Spencer Chapman, Michael, Jackson, David K, Johnston, Ian, Alderton, Alex, Sillitoe, John, Langford, Cordelia, Dougan, Gordon, Peacock, Sharon J, Kwiatowski, Dominic P, Goodfellow, Ian G, Torok, M Estee
Wydane w eLife (2021)