Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data

od Yang, Pengyi, Humphrey, Sean J., James, David E., Yang, Yee Hwa, Jothi, Raja
izdano v Bioinformatics (2016)

Glucose-regulated and drug-perturbed phosphoproteome reveals molecular mechanisms controlling insulin secretion

od Sacco, Francesca, Humphrey, Sean J., Cox, Jürgen, Mischnik, Marcel, Schulte, Anke, Klabunde, Thomas, Schäfer, Matthias, Mann, Matthias
izdano v Nat Commun (2016)

Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2

od Humphrey, Sean J., Yang, Guang, Yang, Pengyi, Fazakerley, Daniel J., Stöckli, Jacqueline, Yang, Jean Y., James, David E.
Izdano 2013

KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis

od Yang, Pengyi, Patrick, Ellis, Humphrey, Sean J., Ghazanfar, Shila, James, David E., Jothi, Raja, Yang, Jean Yee Hwa
izdano v Proteomics (2016)

TBC1D13 IS A RAB35 SPECIFIC GAP THAT PLAYS AN IMPORTANT ROLE IN GLUT4 TRAFFICKING IN ADIPOCYTES

od Davey, Jonathan R, Humphrey, Sean J, Junutula, Jagath R, Mishra, Ashwini K, Lambright, David G, James, David E, Stöckli, Jacqueline
Izdano 2012

Proteomic Analysis of Human Plasma during Intermittent Fasting

od Harney, Dylan J., Hutchison, Amy T., Hatchwell, Luke, Humphrey, Sean J., James, David E., Hocking, Samantha, Heilbronn, Leonie K., Larance, Mark
izdano v J Proteome Res (2019)

Mechanism of Regulation of Intrachromatid Recombination and Long-Range Chromosome Interactions in Saccharomyces cerevisiae

od Zaman, Shamsu, Choudhury, Malay, Jiang, James C., Srivastava, Pankaj, Mohanty, Bidyut K., Danielson, Christopher, Humphrey, Sean J., Jazwinski, S. Michal, Bastia, Deepak
izdano v Mol Cell Biol (2016)

RagC phosphorylation autoregulates mTOR complex 1

od Yang, Guang, Humphrey, Sean J, Murashige, Danielle S, Francis, Deanne, Wang, Qiao‐Ping, Cooke, Kristen C, Neely, G Gregory, James, David E
izdano v EMBO J (2018)

Correction: Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies

od Domanova, Westa, Krycer, James R., Chaudhuri, Rima, Yang, Pengyi, Vafaee, Fatemeh, Fazakerley, Daniel J., Humphrey, Sean J., James, David E., Kuncic, Zdenka
izdano v PLoS One (2017)

ABHD15 regulates adipose tissue lipolysis and hepatic lipid accumulation

od Stöckli, Jacqueline, Zadoorian, Armella, Cooke, Kristen C., Deshpande, Vinita, Yau, Belinda, Herrmann, Gaia, Kebede, Melkam A., Humphrey, Sean J., James, David E.
izdano v Mol Metab (2019)

Corrigendum to ‘ABHD15 regulates adipose tissue lipolysis and hepatic lipid accumulation’ [Molecular Metabolism 25 (2019) p.83–94]

od Stöckli, Jacqueline, Zadoorian, Armella, Cooke, Kristen C., Deshpande, Vinita, Yau, Belinda, Herrmann, Gaia, Kebede, Melkam A., Humphrey, Sean J., James, David E.
izdano v Mol Metab (2021)

Insulin Tolerance Test under Anaesthesia to Measure Tissue-specific Insulin-stimulated Glucose Disposal

od Fazakerley, Daniel J., Fritzen, Andreas M., Nelson, Marin E., Thorius, Ida H., Cooke, Kristen C., Humphrey, Sean J., Cooney, Gregory J., James, David E.
izdano v Bio Protoc (2019)

PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

od Chaudhuri, Rima, Sadrieh, Arash, Hoffman, Nolan J., Parker, Benjamin L., Humphrey, Sean J., Stöckli, Jacqueline, Hill, Adam P., James, David E., Yang, Jean Yee Hwa
izdano v BMC Genomics (2015)

A Two-Dimensional Metallacycle Cross-Linked Switchable Polymer for Fast and Highly Efficient Phosphorylated Peptide Enrichment

od Chen, Li-Jun, Humphrey, Sean J., Zhu, Jun-Long, Zhu, Fan-Fan, Wang, Xu-Qing, Wang, Xiang, Wen, Jin, Yang, Hai-Bo, Gale, Philip A.
izdano v J Am Chem Soc (2021)

mTORC1 Is a Major Regulatory Node in the FGF21 Signaling Network in Adipocytes

od Minard, Annabel Y., Tan, Shi-Xiong, Yang, Pengyi, Fazakerley, Daniel J., Domanova, Westa, Parker, Benjamin L., Humphrey, Sean J., Jothi, Raja, Stöckli, Jacqueline, James, David E.
izdano v Cell Rep (2016)

A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans

od Halova, Lenka, Cobley, David, Franz-Wachtel, Mirita, Wang, Tingting, Morrison, Kaitlin R., Krug, Karsten, Nalpas, Nicolas, Maček, Boris, Hagan, Iain M., Humphrey, Sean J., Petersen, Janni
izdano v Open Biol (2021)

Multi-Omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency

od Yang, Pengyi, Humphrey, Sean J., Cinghu, Senthilkumar, Pathania, Rajneesh, Oldfield, Andrew J., Kumar, Dhirendra, Perera, Dinuka, Yang, Jean Y.H., James, David E., Mann, Matthias, Jothi, Raja
izdano v Cell Syst (2019)

Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning

od Kim, Hani Jieun, Osteil, Pierre, Humphrey, Sean J, Cinghu, Senthilkumar, Oldfield, Andrew J, Patrick, Ellis, Wilkie, Emilie E, Peng, Guangdun, Suo, Shengbao, Jothi, Raja, Tam, Patrick P L, Yang, Pengyi
izdano v Nucleic Acids Res (2020)

Global phosphoproteomics reveals DYRK1A regulates CDK1 activity in glioblastoma cells

od Recasens, Ariadna, Humphrey, Sean J., Ellis, Michael, Hoque, Monira, Abbassi, Ramzi H., Chen, Brianna, Longworth, Mitchell, Needham, Elise J., James, David E., Johns, Terrance G., Day, Bryan W., Kassiou, Michael, Yang, Pengyi, Munoz, Lenka
izdano v Cell Death Discov (2021)

Hyperactivation of the Insulin Signaling Pathway Improves Intracellular Proteostasis by Coordinately Up-regulating the Proteostatic Machinery in Adipocytes

od Minard, Annabel Y., Wong, Martin K. L., Chaudhuri, Rima, Tan, Shi-Xiong, Humphrey, Sean J., Parker, Benjamin L., Yang, Jean Y., Laybutt, D. Ross, Cooney, Gregory J., Coster, Adelle C. F., Stöckli, Jacqueline, James, David E.
izdano v J Biol Chem (2016)