RVD: a command-line program for ultrasensitive rare single nucleotide variant detection using targeted next-generation DNA resequencing

Por Cushing, Anna, Flaherty, Patrick, Hopmans, Erik, Bell, John M, Ji, Hanlee P
Publicado em 2013

Exosomes: Fit to deliver small RNA

Por Zomer, Anoek, Vendrig, Tineke, Hopmans, Erik S, van Eijndhoven, Monique, Middeldorp, Jaap M, Pegtel, D Michiel
Publicado em 2010

A programmable method for massively parallel targeted sequencing

Por Hopmans, Erik S., Natsoulis, Georges, Bell, John M., Grimes, Susan M., Sieh, Weiva, Ji, Hanlee P.
Publicado em 2014

A Novel Persistence Associated EBV miRNA Expression Profile Is Disrupted in Neoplasia

Por Qiu, Jin, Cosmopoulos, Katherine, Pegtel, Michiel, Hopmans, Erik, Murray, Paul, Middeldorp, Jaap, Shapiro, Michael, Thorley-Lawson, David A.
Publicado em 2011

A genome-wide approach for detecting novel insertion-deletion variants of mid-range size

Por Xia, Li C., Sakshuwong, Sukolsak, Hopmans, Erik S., Bell, John M., Grimes, Susan M., Siegmund, David O., Ji, Hanlee P., Zhang, Nancy R.
Publicado no Nucleic Acids Res (2016)

Functional delivery of viral miRNAs via exosomes

Por Pegtel, D. Michiel, Cosmopoulos, Katherine, Thorley-Lawson, David A., van Eijndhoven, Monique A. J., Hopmans, Erik S., Lindenberg, Jelle L., de Gruijl, Tanja D., Würdinger, Thomas, Middeldorp, Jaap M.
Publicado em 2010

Emergence of Hemagglutinin Mutations During the Course of Influenza Infection

Por Cushing, Anna, Kamali, Amanda, Winters, Mark, Hopmans, Erik S., Bell, John M., Grimes, Susan M., Xia, Li C., Zhang, Nancy R., Moss, Ronald B., Holodniy, Mark, Ji, Hanlee P.
Publicado no Sci Rep (2015)

Human and mouse oligonucleotide-based array CGH

Por van den IJssel, Paul, Tijssen, Marianne, Chin, Suet-Feung, Eijk, Paul, Carvalho, Beatriz, Hopmans, Erik, Holstege, Henne, Bangarusamy, Dhinoth Kumar, Jonkers, Jos, Meijer, Gerrit A., Caldas, Carlos, Ylstra, Bauke
Publicado em 2005

LMP1 association with CD63 in endosomes and secretion via exosomes limits constitutive NF-κB activation

Por Verweij, Frederik J, van Eijndhoven, Monique A J, Hopmans, Erik S, Vendrig, Tineke, Wurdinger, Tom, Cahir-McFarland, Ellen, Kieff, Elliott, Geerts, Dirk, van der Kant, Rik, Neefjes, Jacques, Middeldorp, Jaap M, Pegtel, D Michiel
Publicado em 2011

Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma

Por Green, Michael R., Gentles, Andrew J., Nair, Ramesh V., Irish, Jonathan M., Kihira, Shingo, Liu, Chih Long, Kela, Itai, Hopmans, Erik S., Myklebust, June H., Ji, Hanlee, Plevritis, Sylvia K., Levy, Ronald, Alizadeh, Ash A.
Publicado em 2013

Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer

Por Nadauld, Lincoln D, Garcia, Sarah, Natsoulis, Georges, Bell, John M, Miotke, Laura, Hopmans, Erik S, Xu, Hua, Pai, Reetesh K, Palm, Curt, Regan, John F, Chen, Hao, Flaherty, Patrick, Ootani, Akifumi, Zhang, Nancy R, Ford, James M, Kuo, Calvin J, Ji, Hanlee P
Publicado em 2014

Sensing of latent EBV infection through exosomal transfer of 5′pppRNA

Por Baglio, S. Rubina, van Eijndhoven, Monique A. J., Koppers-Lalic, Danijela, Berenguer, Jordi, Lougheed, Sinéad M., Gibbs, Susan, Léveillé, Nicolas, Rinkel, Rico N. P. M., Hopmans, Erik S., Swaminathan, Sankar, Verkuijlen, Sandra A. W. M., Scheffer, George L., van Kuppeveld, Frank J. M., de Gruijl, Tanja D., Bultink, Irene E. M., Jordanova, Ekaterina S., Hackenberg, Michael, Piersma, Sander R., Knol, Jaco C., Voskuyl, Alexandre E., Wurdinger, Thomas, Jiménez, Connie R., Middeldorp, Jaap M., Pegtel, D. Michiel
Publicado no Proc Natl Acad Sci U S A (2016)

Haplotyping germline and cancer genomes using high-throughput linked-read sequencing

Por Zheng, Grace X.Y., Lau, Billy T., Schnall-Levin, Michael, Jarosz, Mirna, Bell, John M., Hindson, Christopher M., Kyriazopoulou-Panagiotopoulou, Sofia, Masquelier, Donald A., Merrill, Landon, Terry, Jessica M., Mudivarti, Patrice A., Wyatt, Paul W., Bharadwaj, Rajiv, Makarewicz, Anthony J., Li, Yuan, Belgrader, Phillip, Price, Andrew D., Lowe, Adam J., Marks, Patrick, Vurens, Gerard M., Hardenbol, Paul, Montesclaros, Luz, Luo, Melissa, Greenfield, Lawrence, Wong, Alexander, Birch, David E., Short, Steven W., Bjornson, Keith P., Patel, Pranav, Hopmans, Erik S., Wood, Christina, Kaur, Sukhvinder, Lockwood, Glenn K., Stafford, David, Delaney, Joshua P., Wu, Indira, Ordonez, Heather S., Grimes, Susan M., Greer, Stephanie, Lee, Josephine Y., Belhocine, Kamila, Giorda, Kristina M., Heaton, William H., McDermott, Geoffrey P., Bent, Zachary W., Meschi, Francesca, Kondov, Nikola O., Wilson, Ryan, Bernate, Jorge A., Gauby, Shawn, Kindwall, Alex, Bermejo, Clara, Fehr, Adrian N., Chan, Adrian, Saxonov, Serge, Ness, Kevin D., Hindson, Benjamin J., Ji, Hanlee P.
Publicado no Nat Biotechnol (2016)