Engineering RNA sequence specificity of Pumilio repeats

ανά Cheong, Cheom-Gil, Hall, Traci M. Tanaka
Έκδοση 2006

Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p

ανά Miller, Matthew T, Higgin, Joshua J, Hall, Traci M Tanaka
Έκδοση 2008

Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate

ανά Zhang, Jun, Gonzalez, Lauren E., Hall, Traci M. Tanaka
Τόπος έκδοσης Nucleic Acids Res (2017)

Preparation of cooperative RNA recognition complexes for crystallographic structural studies

ανά Qiu, Chen, Goldstrohm, Aaron C., Hall, Traci M. Tanaka
Τόπος έκδοσης Methods Enzymol (2019)

Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein

ανά Wang, Yeming, Opperman, Laura, Wickens, Marvin, Hall, Traci M. Tanaka
Έκδοση 2009

Engineering splicing factors with designed specificities

ανά Wang, Yang, Cheong, Cheom-Gil, Hall, Traci M. Tanaka, Wang, Zefeng
Έκδοση 2009

Structural basis for an inositol pyrophosphate kinase surmounting phosphate crowding

ανά Wang, Huanchen, Falck, J R, Hall, Traci M Tanaka, Shears, Stephen B
Έκδοση 2011

A 5′ cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs

ανά Zhu, Deyu, Stumpf, Craig R., Krahn, Joseph M., Wickens, Marvin, Hall, Traci M. Tanaka
Έκδοση 2009

Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site

ανά Valley, Cary T., Porter, Douglas F., Qiu, Chen, Campbell, Zachary T., Hall, Traci M. Tanaka, Wickens, Marvin
Έκδοση 2012

A divergent Pumilio repeat protein family for pre-rRNA processing and mRNA localization

ανά Qiu, Chen, McCann, Kathleen L., Wine, Robert N., Baserga, Susan J., Hall, Traci M. Tanaka
Τόπος έκδοσης Proc Natl Acad Sci U S A (2014)

Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity

ανά Qiu, Chen, Dutcher, Robert C, Porter, Douglas F, Arava, Yoav, Wickens, Marvin, Hall, Traci M Tanaka
Τόπος έκδοσης Nucleic Acids Res (2019)

H/ACA snoRNA levels are regulated during stem cell differentiation

ανά McCann, Kathleen L, Kavari, Sanam L, Burkholder, Adam B, Phillips, Bart T, Hall, Traci M Tanaka
Τόπος έκδοσης Nucleic Acids Res (2020)

Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA

ανά Teramoto, Takamasa, Kaitany, Kipchumba J, Kakuta, Yoshimitsu, Kimura, Makoto, Fierke, Carol A, Hall, Traci M Tanaka
Τόπος έκδοσης Nucleic Acids Res (2020)

Integrated analysis of RNA-binding protein complexes using in vitro selection and high-throughput sequencing and sequence specificity landscapes (SEQRS)

ανά Lou, Tzu-Fang, Weidmann, Chase A, Killingsworth, Jordan, Hall, Traci M Tanaka, Goldstrohm, Aaron C, Campbell, Zachary T
Τόπος έκδοσης Methods (2016)

Solution structure of the Drosha double-stranded RNA-binding domain

ανά Mueller, Geoffrey A, Miller, Matthew T, DeRose, Eugene F, Ghosh, Mahua, London, Robert E, Hall, Traci M Tanaka
Έκδοση 2010

Nop9 is a PUF-like protein that prevents premature cleavage to correctly process pre-18S rRNA

ανά Zhang, Jun, McCann, Kathleen L., Qiu, Chen, Gonzalez, Lauren E., Baserga, Susan J., Hall, Traci M. Tanaka
Τόπος έκδοσης Nat Commun (2016)

Sonic hedgehog protein signals not as a hydrolytic enzyme but as an apparent ligand for Patched

ανά Fuse, Naoyuki, Maiti, Tapan, Wang, Baolin, Porter, Jeffery A., Hall, Traci M. Tanaka, Leahy, Daniel J., Beachy, Philip A.
Έκδοση 1999

U7 snRNP is recruited to histone pre-mRNA in a FLASH-dependent manner by two separate regions of the stem–loop binding protein

ανά Skrajna, Aleksandra, Yang, Xiao-cui, Bucholc, Katarzyna, Zhang, Jun, Hall, Traci M. Tanaka, Dadlez, Michał, Marzluff, William F., Dominski, Zbigniew
Τόπος έκδοσης RNA (2017)

Divergence of Pumilio/fem-3 mRNA Binding Factor (PUF) Protein Specificity through Variations in an RNA-binding Pocket

ανά Qiu, Chen, Kershner, Aaron, Wang, Yeming, Holley, Cynthia P., Wilinski, Daniel, Keles, Sunduz, Kimble, Judith, Wickens, Marvin, Hall, Traci M. Tanaka
Έκδοση 2012

Molecular mechanisms for the regulation of histone mRNA stem-loop–binding protein by phosphorylation

ανά Zhang, Jun, Tan, Dazhi, DeRose, Eugene F., Perera, Lalith, Dominski, Zbigniew, Marzluff, William F., Tong, Liang, Hall, Traci M. Tanaka
Έκδοση 2014