Protein–DNA binding: complexities and multi-protein codes

Por Siggers, Trevor, Gordân, Raluca
Publicado em 2014

COUGER—co-factors associated with uniquely-bound genomic regions

Por Munteanu, Alina, Ohler, Uwe, Gordân, Raluca
Publicado em 2014

A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast

Por Narlikar, Leelavati, Gordân, Raluca, Hartemink, Alexander J
Publicado em 2007

Finding regulatory DNA motifs using alignment-free evolutionary conservation information

Por Gordân, Raluca, Narlikar, Leelavati, Hartemink, Alexander J.
Publicado em 2010

IDENTIFICATION OF CELL CYCLE-REGULATED, PUTATIVE HYPHAL GENES IN CANDIDA ALBICANS

Por GORDÂN, RALUCA, PYNE, SAUMYADIPTA, BULYK, MARTHA L.
Publicado em 2012

Distinguishing direct versus indirect transcription factor–DNA interactions

Por Gordân, Raluca, Hartemink, Alexander J., Bulyk, Martha L.
Publicado em 2009

HDAC inhibitors cause site-specific chromatin remodeling at PU.1-bound enhancers in K562 cells

Por Frank, Christopher L., Manandhar, Dinesh, Gordân, Raluca, Crawford, Gregory E.
Publicado no Epigenetics Chromatin (2016)

Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding

Por Zhao, Jingkang, Li, Dongshunyi, Seo, Jungkyun, Allen, Andrew S., Gordân, Raluca
Publicado no Res Comput Mol Biol (2017)

Stability selection for regression-based models of transcription factor–DNA binding specificity

Por Mordelet, Fantine, Horton, John, Hartemink, Alexander J., Engelhardt, Barbara E., Gordân, Raluca
Publicado em 2013

Protein−DNA binding in the absence of specific base-pair recognition

Por Afek, Ariel, Schipper, Joshua L., Horton, John, Gordân, Raluca, Lukatsky, David B.
Publicado no Proc Natl Acad Sci U S A (2014)

Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes

Por Afek, Ariel, Cohen, Hila, Barber-Zucker, Shiran, Gordân, Raluca, Lukatsky, David B.
Publicado no PLoS Comput Biol (2015)

Absence of a simple code: how transcription factors read the genome

Por Slattery, Matthew, Zhou, Tianyin, Yang, Lin, Machado, Ana Carolina Dantas, Gordân, Raluca, Rohs, Remo
Publicado em 2014

Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi

Por Medina, Edgar M, Turner, Jonathan J, Gordân, Raluca, Skotheim, Jan M, Buchler, Nicolas E
Publicado no eLife (2016)

Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing

Por Miller, Heather B., Robinson, Timothy J., Gordân, Raluca, Hartemink, Alexander J., Garcia-Blanco, Mariano A.
Publicado em 2011

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

Por Gordân, Raluca, Shen, Ning, Dror, Iris, Zhou, Tianyin, Horton, John, Rohs, Remo, Bulyk, Martha L.
Publicado em 2013

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

Por Yang, Lin, Zhou, Tianyin, Dror, Iris, Mathelier, Anthony, Wasserman, Wyeth W., Gordân, Raluca, Rohs, Remo
Publicado em 2014

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

Por MacAlpine, Heather K., Gordân, Raluca, Powell, Sara K., Hartemink, Alexander J., MacAlpine, David M.
Publicado em 2010

Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights

Por Gordân, Raluca, Murphy, Kevin F, McCord, Rachel P, Zhu, Cong, Vedenko, Anastasia, Bulyk, Martha L
Publicado em 2011

Expression level is a key determinant of E2F1-mediated cell fate

Por Shats, Igor, Deng, Michael, Davidovich, Adam, Zhang, Carolyn, Kwon, Jungeun S, Manandhar, Dinesh, Gordân, Raluca, Yao, Guang, You, Lingchong
Publicado no Cell Death Differ (2017)

Quantitative modeling of transcription factor binding specificities using DNA shape

Por Zhou, Tianyin, Shen, Ning, Yang, Lin, Abe, Namiko, Horton, John, Mann, Richard S., Bussemaker, Harmen J., Gordân, Raluca, Rohs, Remo
Publicado no Proc Natl Acad Sci U S A (2015)