Evolutionary Classification of Homeodomains

Tekijä Gindilis, Viktor, Goltsman, Eugene, Verlinsky, Yury
Julkaistu 1998

Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei

Tekijä Morales, Jorge, Kokkori, Sofia, Weidauer, Diana, Chapman, Jarrod, Goltsman, Eugene, Rokhsar, Daniel, Grossman, Arthur R., Nowack, Eva C. M.
Julkaisussa BMC Evol Biol (2016)

Terabase-scale metagenome coassembly with MetaHipMer

Tekijä Hofmeyr, Steven, Egan, Rob, Georganas, Evangelos, Copeland, Alex C., Riley, Robert, Clum, Alicia, Eloe-Fadrosh, Emiley, Roux, Simon, Goltsman, Eugene, Buluç, Aydın, Rokhsar, Daniel, Oliker, Leonid, Yelick, Katherine
Julkaisussa Sci Rep (2020)

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

Tekijä McMurdie, Paul J., Behrens, Sebastian F., Müller, Jochen A., Göke, Jonathan, Ritalahti, Kirsti M., Wagner, Ryan, Goltsman, Eugene, Lapidus, Alla, Holmes, Susan, Löffler, Frank E., Spormann, Alfred M.
Julkaistu 2009

Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis

Tekijä McBride, Mark J., Xie, Gary, Martens, Eric C., Lapidus, Alla, Henrissat, Bernard, Rhodes, Ryan G., Goltsman, Eugene, Wang, Wei, Xu, Jian, Hunnicutt, David W., Staroscik, Andrew M., Hoover, Timothy R., Cheng, Yi-Qiang, Stein, Jennifer L.
Julkaistu 2009

Complete genome sequence of Methanocorpusculum labreanum type strain Z

Tekijä Anderson, Iain J., Sieprawska-Lupa, Magdalena, Goltsman, Eugene, Lapidus, Alla, Copeland, Alex, Glavina Del Rio, Tijana, Tice, Hope, Dalin, Eileen, Barry, Kerrie, Pitluck, Sam, Hauser, Loren, Land, Miriam, Lucas, Susan, Richardson, Paul, Whitman, William B., Kyrpides, Nikos C.
Julkaistu 2009

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens

Tekijä Anderson, Iain, Ulrich, Luke E., Lupa, Boguslaw, Susanti, Dwi, Porat, Iris, Hooper, Sean D., Lykidis, Athanasios, Sieprawska-Lupa, Magdalena, Dharmarajan, Lakshmi, Goltsman, Eugene, Lapidus, Alla, Saunders, Elizabeth, Han, Cliff, Land, Miriam, Lucas, Susan, Mukhopadhyay, Biswarup, Whitman, William B., Woese, Carl, Bristow, James, Kyrpides, Nikos
Julkaistu 2009

Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000

Tekijä Feil, Helene, Feil, William S., Chain, Patrick, Larimer, Frank, DiBartolo, Genevieve, Copeland, Alex, Lykidis, Athanasios, Trong, Stephen, Nolan, Matt, Goltsman, Eugene, Thiel, James, Malfatti, Stephanie, Loper, Joyce E., Lapidus, Alla, Detter, John C., Land, Miriam, Richardson, Paul M., Kyrpides, Nikos C., Ivanova, Natalia, Lindow, Steven E.
Julkaistu 2005

A korarchaeal genome reveals insights into the evolution of the Archaea

Tekijä Elkins, James G., Podar, Mircea, Graham, David E., Makarova, Kira S., Wolf, Yuri, Randau, Lennart, Hedlund, Brian P., Brochier-Armanet, Céline, Kunin, Victor, Anderson, Iain, Lapidus, Alla, Goltsman, Eugene, Barry, Kerrie, Koonin, Eugene V., Hugenholtz, Phil, Kyrpides, Nikos, Wanner, Gerhard, Richardson, Paul, Keller, Martin, Stetter, Karl O.
Julkaistu 2008

Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))

Tekijä Plugge, Caroline M., Henstra, Anne M., Worm, Petra, Swarts, Daan C., Paulitsch-Fuchs, Astrid H., Scholten, Johannes C.M., Lykidis, Athanasios, Lapidus, Alla L., Goltsman, Eugene, Kim, Edwin, McDonald, Erin, Rohlin, Lars, Crable, Bryan R., Gunsalus, Robert P., Stams, Alfons J.M., McInerney, Michael J.
Julkaistu 2012

Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus

Tekijä Bolotin, Alexander, Quinquis, Benoît, Renault, Pierre, Sorokin, Alexei, Ehrlich, S Dusko, Kulakauskas, Saulius, Lapidus, Alla, Goltsman, Eugene, Mazur, Michael, Pusch, Gordon D, Fonstein, Michael, Overbeek, Ross, Kyprides, Nikos, Purnelle, Bénédicte, Prozzi, Deborah, Ngui, Katrina, Masuy, David, Hancy, Frédéric, Burteau, Sophie, Boutry, Marc, Delcour, Jean, Goffeau, André, Hols, Pascal
Julkaisussa Nat Biotechnol (2004)

Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586

Tekijä Kapatral, Vinayak, Anderson, Iain, Ivanova, Natalia, Reznik, Gary, Los, Tamara, Lykidis, Athanasios, Bhattacharyya, Anamitra, Bartman, Allen, Gardner, Warren, Grechkin, Galina, Zhu, Lihua, Vasieva, Olga, Chu, Lien, Kogan, Yakov, Chaga, Oleg, Goltsman, Eugene, Bernal, Axel, Larsen, Niels, D'Souza, Mark, Walunas, Theresa, Pusch, Gordon, Haselkorn, Robert, Fonstein, Michael, Kyrpides, Nikos, Overbeek, Ross
Julkaistu 2002

The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode

Tekijä Foster, Jeremy, Ganatra, Mehul, Kamal, Ibrahim, Ware, Jennifer, Makarova, Kira, Ivanova, Natalia, Bhattacharyya, Anamitra, Kapatral, Vinayak, Kumar, Sanjay, Posfai, Janos, Vincze, Tamas, Ingram, Jessica, Moran, Laurie, Lapidus, Alla, Omelchenko, Marina, Kyrpides, Nikos, Ghedin, Elodie, Wang, Shiliang, Goltsman, Eugene, Joukov, Victor, Ostrovskaya, Olga, Tsukerman, Kiryl, Mazur, Mikhail, Comb, Donald, Koonin, Eugene, Slatko, Barton
Julkaistu 2005

Genome Sequence of the Verrucomicrobium Opitutus terrae PB90-1, an Abundant Inhabitant of Rice Paddy Soil Ecosystems

Tekijä van Passel, Mark W. J., Kant, Ravi, Palva, Airi, Copeland, Alex, Lucas, Susan, Lapidus, Alla, Glavina del Rio, Tijana, Pitluck, Sam, Goltsman, Eugene, Clum, Alicia, Sun, Hui, Schmutz, Jeremy, Larimer, Frank W., Land, Miriam L., Hauser, Loren, Kyrpides, Nikolaos, Mikhailova, Natalia, Richardson, P. Paul, Janssen, Peter H., de Vos, Willem M., Smidt, Hauke
Julkaistu 2011

The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri

Tekijä Frese, Steven A., Benson, Andrew K., Tannock, Gerald W., Loach, Diane M., Kim, Jaehyoung, Zhang, Min, Oh, Phaik Lyn, Heng, Nicholas C. K., Patil, Prabhu B., Juge, Nathalie, MacKenzie, Donald A., Pearson, Bruce M., Lapidus, Alla, Dalin, Eileen, Tice, Hope, Goltsman, Eugene, Land, Miriam, Hauser, Loren, Ivanova, Natalia, Kyrpides, Nikos C., Walter, Jens
Julkaistu 2011

The genome sequence of the facultative intracellular pathogen Brucella melitensis

Tekijä DelVecchio, Vito G., Kapatral, Vinayak, Redkar, Rajendra J., Patra, Guy, Mujer, Cesar, Los, Tamara, Ivanova, Natalia, Anderson, Iain, Bhattacharyya, Anamitra, Lykidis, Athanasios, Reznik, Gary, Jablonski, Lynn, Larsen, Niels, D'Souza, Mark, Bernal, Axel, Mazur, Mikhail, Goltsman, Eugene, Selkov, Eugene, Elzer, Philip H., Hagius, Sue, O'Callaghan, David, Letesson, Jean-Jacques, Haselkorn, Robert, Kyrpides, Nikos, Overbeek, Ross
Julkaistu 2002

Complete genome sequence of Meiothermus ruber type strain (21(T))

Tekijä Tindall, Brian J, Sikorski, Johannes, Lucas, Susan, Goltsman, Eugene, Copeland, Alex, Glavina Del Rio, Tijana, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Fähnrich, Regine, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, Lapidus, Alla
Julkaistu 2010

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

Tekijä Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Julkaisussa Nat Commun (2020)

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

Tekijä Normand, Philippe, Lapierre, Pascal, Tisa, Louis S., Gogarten, Johann Peter, Alloisio, Nicole, Bagnarol, Emilie, Bassi, Carla A., Berry, Alison M., Bickhart, Derek M., Choisne, Nathalie, Couloux, Arnaud, Cournoyer, Benoit, Cruveiller, Stephane, Daubin, Vincent, Demange, Nadia, Francino, Maria Pilar, Goltsman, Eugene, Huang, Ying, Kopp, Olga R., Labarre, Laurent, Lapidus, Alla, Lavire, Celine, Marechal, Joelle, Martinez, Michele, Mastronunzio, Juliana E., Mullin, Beth C., Niemann, James, Pujic, Pierre, Rawnsley, Tania, Rouy, Zoe, Schenowitz, Chantal, Sellstedt, Anita, Tavares, Fernando, Tomkins, Jeffrey P., Vallenet, David, Valverde, Claudio, Wall, Luis G., Wang, Ying, Medigue, Claudine, Benson, David R.
Julkaistu 2007