Gradients in nucleotide and codon usage along Escherichia coli genes

Por Hooper, Sean D., Berg, Otto G.
Publicado em 2000

Duplication is more common among laterally transferred genes than among indigenous genes

Por Hooper, Sean D, Berg, Otto G
Publicado em 2003

Microbial co-habitation and lateral gene transfer: what transposases can tell us

Por Hooper, Sean D, Mavromatis, Konstantinos, Kyrpides, Nikos C
Publicado em 2009

Environments shape the nucleotide composition of genomes

Por Foerstner, Konrad U, von Mering, Christian, Hooper, Sean D, Bork, Peer
Publicado em 2005

OnTheFly: a tool for automated document-based text annotation, data linking and network generation

Por Pavlopoulos, Georgios A., Pafilis, Evangelos, Kuhn, M., Hooper, Sean D., Schneider, Reinhard
Publicado em 2009

Medusa: A tool for exploring and clustering biological networks

Por Pavlopoulos, Georgios A, Hooper, Sean D, Sifrim, Alejandro, Schneider, Reinhard, Aerts, Jan
Publicado em 2011

jClust: a clustering and visualization toolbox

Por Pavlopoulos, Georgios A., Moschopoulos, Charalampos N., Hooper, Sean D., Schneider, Reinhard, Kossida, Sophia
Publicado em 2009

A Molecular Study of Microbe Transfer between Distant Environments

Por Hooper, Sean D., Raes, Jeroen, Foerstner, Konrad U., Harrington, Eoghan D., Dalevi, Daniel, Bork, Peer
Publicado em 2008

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach

Por Hooper, Sean D., Anderson, Iain J., Pati, Amrita, Dalevi, Daniel, Mavromatis, Konstantinos, Kyrpides, Nikos C.
Publicado em 2009

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

Por Mavromatis, Konstantinos, Chu, Ken, Ivanova, Natalia, Hooper, Sean D., Markowitz, Victor M., Kyrpides, Nikos C.
Publicado em 2009

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

Por Hooper, Sean D., Dalevi, Daniel, Pati, Amrita, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2010

Sequence based analysis of U-2973, a cell line established from a double-hit B-cell lymphoma with concurrent MYC and BCL2 rearrangements

Por Hooper, Sean D, Jiao, Xiang, Sundström, Elisabeth, Rehman, Farah L, Tellgren-Roth, Christian, Sjöblom, Tobias, Cavelier, Lucia
Publicado em 2012

Structural Alterations from Multiple Displacement Amplification of a Human Genome Revealed by Mate-Pair Sequencing

Por Jiao, Xiang, Rosenlund, Magnus, Hooper, Sean D., Tellgren-Roth, Christian, He, Liqun, Fu, Yutao, Mangion, Jonathan, Sjöblom, Tobias
Publicado em 2011

Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder

Por Hooper, Sean D, Johansson, Anna CV, Tellgren-Roth, Christian, Stattin, Eva-Lena, Dahl, Niklas, Cavelier, Lucia, Feuk, Lars
Publicado em 2012

Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing

Por Jiao, Xiang, Hooper, Sean D, Djureinovic, Tatjana, Larsson, Chatarina, Wärnberg, Fredrik, Tellgren-Roth, Christian, Botling, Johan, Sjöblom, Tobias
Publicado em 2013

Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes

Por Anderson, Iain, Scheuner, Carmen, Göker, Markus, Mavromatis, Kostas, Hooper, Sean D., Porat, Iris, Klenk, Hans-Peter, Ivanova, Natalia, Kyrpides, Nikos
Publicado em 2011

Systematic Association of Genes to Phenotypes by Genome and Literature Mining

Por Korbel, Jan O, Doerks, Tobias, Jensen, Lars J, Perez-Iratxeta, Carolina, Kaczanowski, Szymon, Hooper, Sean D, Andrade, Miguel A, Bork, Peer
Publicado em 2005

STRING: known and predicted protein–protein associations, integrated and transferred across organisms

Por von Mering, Christian, Jensen, Lars J., Snel, Berend, Hooper, Sean D., Krupp, Markus, Foglierini, Mathilde, Jouffre, Nelly, Huynen, Martijn A., Bork, Peer
Publicado em 2005

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

Por Hooper, Sean D, Boué, Stephanie, Krause, Roland, Jensen, Lars J, Mason, Christopher E, Ghanim, Murad, White, Kevin P, Furlong, Eileen EM, Bork, Peer
Publicado em 2007

Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii

Por Mavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Hooper, Sean D., Sun, Hui, Kunin, Victor, Lapidus, Alla, Hugenholtz, Philip, Patel, Bharat, Kyrpides, Nikos C.
Publicado em 2009