A new network representation of the metabolism to detect chemical transformation modules

Por Sorokina, Maria, Medigue, Claudine, Vallenet, David
Publicado no BMC Bioinformatics (2015)

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC

Por Engelen, Stefan, Vallenet, David, Médigue, Claudine, Danchin, Antoine
Publicado em 2012

AMIGene: Annotation of MIcrobial Genes

Por Bocs, Stéphanie, Cruveiller, Stéphane, Vallenet, David, Nuel, Grégory, Médigue, Claudine
Publicado em 2003

Profiling the orphan enzymes

Por Sorokina, Maria, Stam, Mark, Médigue, Claudine, Lespinet, Olivier, Vallenet, David
Publicado em 2014

The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes

Por Smith, Adam Alexander Thil, Belda, Eugeni, Viari, Alain, Medigue, Claudine, Vallenet, David
Publicado em 2012

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

Por Cruveiller, Stéphane, Le Saux, Jérôme, Vallenet, David, Lajus, Aurélie, Bocs, Stéphanie, Médigue, Claudine
Publicado em 2005

Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium

Por Gerbore, Jonathan, Brutel, Aline, Lemainque, Arnaud, Mairey, Barbara, Médigue, Claudine, Vallenet, David, Lefort, Francois, Grizard, Damien
Publicado no Genome Announc (2016)

Complete Genome Sequence of Streptomyces cattleya NRRL 8057, a Producer of Antibiotics and Fluorometabolites

Por Barbe, Valérie, Bouzon, Madeleine, Mangenot, Sophie, Badet, Bernard, Poulain, Julie, Segurens, Béatrice, Vallenet, David, Marlière, Philippe, Weissenbach, Jean
Publicado em 2011

Channel Formation by CarO, the Carbapenem Resistance-Associated Outer Membrane Protein of Acinetobacter baumannii

Por Siroy, Axel, Molle, Virginie, Lemaître-Guillier, Christelle, Vallenet, David, Pestel-Caron, Martine, Cozzone, Alain J., Jouenne, Thierry, Dé, Emmanuelle
Publicado em 2005

RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti

Por de Groot, Arjan, Roche, David, Fernandez, Bernard, Ludanyi, Monika, Cruveiller, Stéphane, Pignol, David, Vallenet, David, Armengaud, Jean, Blanchard, Laurence
Publicado em 2014

MaGe: a microbial genome annotation system supported by synteny results

Por Vallenet, David, Labarre, Laurent, Rouy, Zoé, Barbe, Valérie, Bocs, Stéphanie, Cruveiller, Stéphane, Lajus, Aurélie, Pascal, Géraldine, Scarpelli, Claude, Médigue, Claudine
Publicado em 2006

Genome Sequence of Micromonospora lupini Lupac 08, Isolated from Root Nodules of Lupinus angustifolius

Por Alonso-Vega, Pablo, Normand, Philippe, Bacigalupe, Rodrigo, Pujic, Petar, Lajus, Aurelie, Vallenet, David, Carro, Lorena, Coll, Pedro, Trujillo, Martha E.
Publicado em 2012

Comparative Genomics of Aeschynomene Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia

Por Mornico, Damien, Miché, Lucie, Béna, Gilles, Nouwen, Nico, Verméglio, André, Vallenet, David, Smith, Alexander A.T., Giraud, Eric, Médigue, Claudine, Moulin, Lionel
Publicado em 2011

Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data

Por Durot, Maxime, Le Fèvre, François, de Berardinis, Véronique, Kreimeyer, Annett, Vallenet, David, Combe, Cyril, Smidtas, Serge, Salanoubat, Marcel, Weissenbach, Jean, Schachter, Vincent
Publicado em 2008

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

Por Barbe, Valérie, Cruveiller, Stéphane, Kunst, Frank, Lenoble, Patricia, Meurice, Guillaume, Sekowska, Agnieszka, Vallenet, David, Wang, Tingzhang, Moszer, Ivan, Médigue, Claudine, Danchin, Antoine
Publicado em 2009

A Conserved Gene Cluster Rules Anaerobic Oxidative Degradation of l-Ornithine

Por Fonknechten, Nuria, Perret, Alain, Perchat, Nadia, Tricot, Sabine, Lechaplais, Christophe, Vallenet, David, Vergne, Carine, Zaparucha, Anne, Le Paslier, Denis, Weissenbach, Jean, Salanoubat, Marcel
Publicado em 2009

NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis

Por Rusniok, Christophe, Vallenet, David, Floquet, Stéphanie, Ewles, Helen, Mouzé-Soulama, Coralie, Brown, Daniel, Lajus, Aurélie, Buchrieser, Carmen, Médigue, Claudine, Glaser, Philippe, Pelicic, Vladimir
Publicado em 2009

Core and Panmetabolism in Escherichia coli

Por Vieira, Gilles, Sabarly, Victor, Bourguignon, Pierre-Yves, Durot, Maxime, Le Fèvre, François, Mornico, Damien, Vallenet, David, Bouvet, Odile, Denamur, Erick, Schachter, Vincent, Médigue, Claudine
Publicado em 2011

A Novel Acyl-CoA Beta-Transaminase Characterized from a Metagenome

Por Perret, Alain, Lechaplais, Christophe, Tricot, Sabine, Perchat, Nadia, Vergne, Carine, Pellé, Christine, Bastard, Karine, Kreimeyer, Annett, Vallenet, David, Zaparucha, Anne, Weissenbach, Jean, Salanoubat, Marcel
Publicado em 2011

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

Por Vallenet, David, Calteau, Alexandra, Cruveiller, Stéphane, Gachet, Mathieu, Lajus, Aurélie, Josso, Adrien, Mercier, Jonathan, Renaux, Alexandre, Rollin, Johan, Rouy, Zoe, Roche, David, Scarpelli, Claude, Médigue, Claudine
Publicado no Nucleic Acids Res (2017)