Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences

gan Engelen, Stéfan, Tahi, Fariza
Cyhoeddwyd 2007

Tfold: efficient in silico prediction of non-coding RNA secondary structures

gan Engelen, Stéfan, Tahi, Fariza
Cyhoeddwyd 2010

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC

gan Engelen, Stefan, Vallenet, David, Médigue, Claudine, Danchin, Antoine
Cyhoeddwyd 2012

Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling

gan Engelen, Stefan, Trojan, Ladislas A., Sacquin-Mora, Sophie, Lavery, Richard, Carbone, Alessandra
Cyhoeddwyd 2009

A double-blind randomized controlled trial comparing dexamethasone and clonidine as adjuvants to a ropivacaine sciatic popliteal block for foot surgery

gan Vermeylen, Kris, De Puydt, Joris, Engelen, Stefan, Roofthooft, Eva, Soetens, Filiep, Neyrinck, Arne, Van de Velde, Marc
Cyhoeddwyd yn Local Reg Anesth (2016)

Genome assembly using Nanopore-guided long and error-free DNA reads

gan Madoui, Mohammed-Amin, Engelen, Stefan, Cruaud, Corinne, Belser, Caroline, Bertrand, Laurie, Alberti, Adriana, Lemainque, Arnaud, Wincker, Patrick, Aury, Jean-Marc
Cyhoeddwyd yn BMC Genomics (2015)

A framework for in situ molecular characterization of coral holobionts using nanopore sequencing

gan Carradec, Quentin, Poulain, Julie, Boissin, Emilie, Hume, Benjamin C. C., Voolstra, Christian R., Ziegler, Maren, Engelen, Stefan, Cruaud, Corinne, Planes, Serge, Wincker, Patrick
Cyhoeddwyd yn Sci Rep (2020)

Author Correction: A framework for in situ molecular characterization of coral holobionts using nanopore sequencing

gan Carradec, Quentin, Poulain, Julie, Boissin, Emilie, Hume, Benjamin C. C., Voolstra, Christian R., Ziegler, Maren, Engelen, Stefan, Cruaud, Corinne, Planes, Serge, Wincker, Patrick
Cyhoeddwyd yn Sci Rep (2021)

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

gan Alberti, Adriana, Belser, Caroline, Engelen, Stéfan, Bertrand, Laurie, Orvain, Céline, Brinas, Laura, Cruaud, Corinne, Giraut, Laurène, Da Silva, Corinne, Firmo, Cyril, Aury, Jean-Marc, Wincker, Patrick
Cyhoeddwyd 2014

Transposition favors the generation of large effect mutations that may facilitate rapid adaption

gan Quadrana, Leandro, Etcheverry, Mathilde, Gilly, Arthur, Caillieux, Erwann, Madoui, Mohammed-Amin, Guy, Julie, Bortolini Silveira, Amanda, Engelen, Stefan, Baillet, Victoire, Wincker, Patrick, Aury, Jean-Marc, Colot, Vincent
Cyhoeddwyd yn Nat Commun (2019)

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

gan Hennion, Magali, Arbona, Jean-Michel, Lacroix, Laurent, Cruaud, Corinne, Theulot, Bertrand, Tallec, Benoît Le, Proux, Florence, Wu, Xia, Novikova, Elizaveta, Engelen, Stefan, Lemainque, Arnaud, Audit, Benjamin, Hyrien, Olivier
Cyhoeddwyd yn Genome Biol (2020)

TE-Tracker: systematic identification of transposition events through whole-genome resequencing

gan Gilly, Arthur, Etcheverry, Mathilde, Madoui, Mohammed-Amin, Guy, Julie, Quadrana, Leandro, Alberti, Adriana, Martin, Antoine, Heitkam, Tony, Engelen, Stefan, Labadie, Karine, Le Pen, Jeremie, Wincker, Patrick, Colot, Vincent, Aury, Jean-Marc
Cyhoeddwyd yn BMC Bioinformatics (2014)

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

gan Istace, Benjamin, Friedrich, Anne, d'Agata, Léo, Faye, Sébastien, Payen, Emilie, Beluche, Odette, Caradec, Claudia, Davidas, Sabrina, Cruaud, Corinne, Liti, Gianni, Lemainque, Arnaud, Engelen, Stefan, Wincker, Patrick, Schacherer, Joseph, Aury, Jean-Marc
Cyhoeddwyd yn Gigascience (2017)

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

gan Vallenet, David, Belda, Eugeni, Calteau, Alexandra, Cruveiller, Stéphane, Engelen, Stefan, Lajus, Aurélie, Le Fèvre, François, Longin, Cyrille, Mornico, Damien, Roche, David, Rouy, Zoé, Salvignol, Gregory, Scarpelli, Claude, Thil Smith, Adam Alexander, Weiman, Marion, Médigue, Claudine
Cyhoeddwyd 2013

Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data

gan Benjelloun, Badr, Alberto, Florian J., Streeter, Ian, Boyer, Frédéric, Coissac, Eric, Stucki, Sylvie, BenBati, Mohammed, Ibnelbachyr, Mustapha, Chentouf, Mouad, Bechchari, Abdelmajid, Leempoel, Kevin, Alberti, Adriana, Engelen, Stefan, Chikhi, Abdelkader, Clarke, Laura, Flicek, Paul, Joost, Stéphane, Taberlet, Pierre, Pompanon, François
Cyhoeddwyd yn Front Genet (2015)

An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity

gan Benjelloun, Badr, Boyer, Frédéric, Streeter, Ian, Zamani, Wahid, Engelen, Stefan, Alberti, Adriana, Alberto, Florian J., BenBati, Mohamed, Ibnelbachyr, Mustapha, Chentouf, Mouad, Bechchari, Abdelmajid, Rezaei, Hamid R., Naderi, Saeid, Stella, Alessandra, Chikhi, Abdelkader, Clarke, Laura, Kijas, James, Flicek, Paul, Taberlet, Pierre, Pompanon, François
Cyhoeddwyd yn Mol Ecol Resour (2019)

Genome evolution across 1,011 Saccharomyces cerevisiae isolates

gan Peter, Jackson, De Chiara, Matteo, Friedrich, Anne, Yue, Jia-Xing, Pflieger, David, Bergström, Anders, Sigwalt, Anastasie, Barre, Benjamin, Freel, Kelle, Llored, Agnès, Cruaud, Corinne, Labadie, Karine, Aury, Jean-Marc, Istace, Benjamin, Lebrigand, Kevin, Barbry, Pascal, Engelen, Stefan, Lemainque, Arnaud, Wincker, Patrick, Liti, Gianni, Schacherer, Joseph
Cyhoeddwyd yn Nature (2018)

Long-read assembly of the Brassica napus reference genome Darmor-bzh

gan Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc
Cyhoeddwyd yn Gigascience (2020)

Convergent genomic signatures of domestication in sheep and goats

gan Alberto, Florian J., Boyer, Frédéric, Orozco-terWengel, Pablo, Streeter, Ian, Servin, Bertrand, de Villemereuil, Pierre, Benjelloun, Badr, Librado, Pablo, Biscarini, Filippo, Colli, Licia, Barbato, Mario, Zamani, Wahid, Alberti, Adriana, Engelen, Stefan, Stella, Alessandra, Joost, Stéphane, Ajmone-Marsan, Paolo, Negrini, Riccardo, Orlando, Ludovic, Rezaei, Hamid Reza, Naderi, Saeid, Clarke, Laura, Flicek, Paul, Wincker, Patrick, Coissac, Eric, Kijas, James, Tosser-Klopp, Gwenola, Chikhi, Abdelkader, Bruford, Michael W., Taberlet, Pierre, Pompanon, François
Cyhoeddwyd yn Nat Commun (2018)

A global ocean atlas of eukaryotic genes

gan Carradec, Quentin, Pelletier, Eric, Da Silva, Corinne, Alberti, Adriana, Seeleuthner, Yoann, Blanc-Mathieu, Romain, Lima-Mendez, Gipsi, Rocha, Fabio, Tirichine, Leila, Labadie, Karine, Kirilovsky, Amos, Bertrand, Alexis, Engelen, Stefan, Madoui, Mohammed-Amin, Méheust, Raphaël, Poulain, Julie, Romac, Sarah, Richter, Daniel J., Yoshikawa, Genki, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Searson, Sarah, Jaillon, Olivier, Aury, Jean-Marc, Karsenti, Eric, Sullivan, Matthew B., Sunagawa, Shinichi, Bork, Peer, Not, Fabrice, Hingamp, Pascal, Raes, Jeroen, Guidi, Lionel, Ogata, Hiroyuki, de Vargas, Colomban, Iudicone, Daniele, Bowler, Chris, Wincker, Patrick
Cyhoeddwyd yn Nat Commun (2018)