Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads

af Aury, Jean-Marc, Istace, Benjamin
Udgivet i NAR Genom Bioinform (2021)

BiSCoT: improving large eukaryotic genome assemblies with optical maps

af Istace, Benjamin, Belser, Caroline, Aury, Jean-Marc
Udgivet i PeerJ (2020)

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments

af Bruno, Aimeric, Aury, Jean-Marc, Engelen, Stefan
Udgivet i BMC Bioinformatics (2021)

The Complete Chloroplast Genome of Banana (Musa acuminata, Zingiberales): Insight into Plastid Monocotyledon Evolution

af Martin, Guillaume, Baurens, Franc-Christophe, Cardi, Céline, Aury, Jean-Marc, D’Hont, Angélique
Udgivet 2013

De novo clustering of long reads by gene from transcriptomics data

af Marchet, Camille, Lecompte, Lolita, Silva, Corinne Da, Cruaud, Corinne, Aury, Jean-Marc, Nicolas, Jacques, Peterlongo, Pierre
Udgivet i Nucleic Acids Res (2019)

Complete Genome Sequence of the Facultative Methylotroph Methylobacterium extorquens TK 0001 Isolated from Soil in Poland

af Belkhelfa, Sophia, Labadie, Karine, Cruaud, Corinne, Aury, Jean-Marc, Roche, David, Bouzon, Madeleine, Salanoubat, Marcel, Döring, Volker
Udgivet i Genome Announc (2018)

MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data

af Madoui, Mohammed-Amin, Dossat, Carole, d’Agata, Léo, van Oeveren, Jan, van der Vossen, Edwin, Aury, Jean-Marc
Udgivet i BMC Bioinformatics (2016)

Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules

af Sessegolo, Camille, Cruaud, Corinne, Da Silva, Corinne, Cologne, Audric, Dubarry, Marion, Derrien, Thomas, Lacroix, Vincent, Aury, Jean-Marc
Udgivet i Sci Rep (2019)

Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific Ocean

af Wang, Shi-Zhen, Cruaud, Corinne, Aury, Jean-Marc, Vallenet, David, Poulain, Julie, Vacherie, Benoit, Zaparucha, Anne, Vergne-Vaxelaire, Carine
Udgivet i Microbiol Resour Announc (2021)

Sequence diversity and evolution of a group of iflaviruses associated with ticks

af Daveu, Romain, Hervet, Caroline, Sigrist, Louane, Sassera, Davide, Jex, Aaron, Labadie, Karine, Aury, Jean-Marc, Plantard, Olivier, Rispe, Claude
Udgivet i Arch Virol (2021)

Coprolites as a source of information on the genome and diet of the cave hyena

af Bon, Céline, Berthonaud, Véronique, Maksud, Frédéric, Labadie, Karine, Poulain, Julie, Artiguenave, François, Wincker, Patrick, Aury, Jean-Marc, Elalouf, Jean-Marc
Udgivet 2012

Genome assembly using Nanopore-guided long and error-free DNA reads

af Madoui, Mohammed-Amin, Engelen, Stefan, Cruaud, Corinne, Belser, Caroline, Bertrand, Laurie, Alberti, Adriana, Lemainque, Arnaud, Wincker, Patrick, Aury, Jean-Marc
Udgivet i BMC Genomics (2015)

High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing

af Fournier, Téo, Gounot, Jean-Sébastien, Freel, Kelle, Cruaud, Corinne, Lemainque, Arnaud, Aury, Jean-Marc, Wincker, Patrick, Schacherer, Joseph, Friedrich, Anne
Udgivet i G3 (Bethesda) (2017)

Adaptive introgression as a driver of local adaptation to climate in European white oaks

af Leroy, Thibault, Louvet, Jean-Marc, Lalanne, Céline, Le Provost, Grégoire, Labadie, Karine, Aury, Jean-Marc, Delzon, Sylvain, Plomion, Christophe, Kremer, Antoine
Udgivet i New Phytol (2019)

In Silico Survey of the Mitochondrial Protein Uptake and Maturation Systems in the Brown Alga Ectocarpus siliculosus

af Delage, Ludovic, Leblanc, Catherine, Nyvall Collén, Pi, Gschloessl, Bernhard, Oudot, Marie-Pierre, Sterck, Lieven, Poulain, Julie, Aury, Jean-Marc, Cock, J. Mark
Udgivet 2011

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

af Aury, Jean-Marc, Cruaud, Corinne, Barbe, Valérie, Rogier, Odile, Mangenot, Sophie, Samson, Gaelle, Poulain, Julie, Anthouard, Véronique, Scarpelli, Claude, Artiguenave, François, Wincker, Patrick
Udgivet 2008

Extensive recent secondary contacts between four European white oak species

af Leroy, Thibault, Roux, Camille, Villate, Laure, Bodénès, Catherine, Romiguier, Jonathan, Paiva, Jorge A. P., Dossat, Carole, Aury, Jean-Marc, Plomion, Christophe, Kremer, Antoine
Udgivet i New Phytol (2017)

Assessing the Drosophila melanogaster and Anopheles gambiae Genome Annotations Using Genome-Wide Sequence Comparisons

af Jaillon, Olivier, Dossat, Carole, Eckenberg, Ralph, Eiglmeier, Karin, Segurens, Béatrice, Aury, Jean-Marc, Roth, Charles W., Scarpelli, Claude, Brey, Paul T., Weissenbach, Jean, Wincker, Patrick
Udgivet 2003

Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20)

af Falentin, Hélène, Deutsch, Stéphanie-Marie, Loux, Valentin, Hammani, Amal, Buratti, Julien, Parayre, Sandrine, Chuat, Victoria, Barbe, Valérie, Aury, Jean-Marc, Jan, Gwenaël, Le Loir, Yves
Udgivet i Stand Genomic Sci (2016)

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

af Leroy, Thibault, Rougemont, Quentin, Dupouey, Jean-Luc, Bodénès, Catherine, Lalanne, Céline, Belser, Caroline, Labadie, Karine, Le Provost, Grégoire, Aury, Jean-Marc, Kremer, Antoine, Plomion, Christophe
Udgivet i New Phytol (2019)