HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

Por Dimon, Michelle T., Sorber, Katherine, DeRisi, Joseph L.
Publicado em 2010

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts

Por Sorber, Katherine, Dimon, Michelle T., DeRisi, Joseph L.
Publicado em 2011

IMSA: Integrated Metagenomic Sequence Analysis for Identification of Exogenous Reads in a Host Genomic Background

Por Dimon, Michelle T., Wood, Henry M., Rabbitts, Pamela H., Arron, Sarah T.
Publicado em 2013

An Efficient Method for Identifying Gene Fusions by Targeted RNA Sequencing from Fresh Frozen and FFPE Samples

Por Scolnick, Jonathan A., Dimon, Michelle, Wang, I-Ching, Huelga, Stephanie C., Amorese, Douglas A.
Publicado no PLoS One (2015)

No evidence for integrated viral DNA in the genome sequence of cutaneous squamous cell carcinoma

Por Dimon, Michelle T., Wood, Henry M., Rabbitts, Pamela H., Liao, Wilson, Cho, Raymond J., Arron, Sarah T.
Publicado em 2014

The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing

Por Sorber, Katherine, Chiu, Charles, Webster, Dale, Dimon, Michelle, Ruby, J. Graham, Hekele, Armin, DeRisi, Joseph L.
Publicado em 2008

ReCombine: A Suite of Programs for Detection and Analysis of Meiotic Recombination in Whole-Genome Datasets

Por Anderson, Carol M., Chen, Stacy Y., Dimon, Michelle T., Oke, Ashwini, DeRisi, Joseph L., Fung, Jennifer C.
Publicado em 2011

RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti

Por Bonizzoni, Mariangela, Dunn, W Augustine, Campbell, Corey L, Olson, Ken E, Dimon, Michelle T, Marinotti, Osvaldo, James, Anthony A
Publicado em 2011

High Rhodotorula sequences in skin transcriptome of patients with diffuse systemic sclerosis

Por Arron, Sarah T., Dimon, Michelle T., Li, Zhenghui, Johnson, Michael E., Wood, Tammara, Feeney, Luzviminda, Angeles, Jorge Gil, Lafyatis, Robert, Whitfield, Michael L.
Publicado em 2014

Combined targeting of MEK and PI3K/mTOR effector pathways is necessary to effectively inhibit NRAS mutant melanoma in vitro and in vivo

Por Posch, Christian, Moslehi, Homayoun, Feeney, Luzviminda, Green, Gary A., Ebaee, Anoosheh, Feichtenschlager, Valentin, Chong, Kim, Peng, Lily, Dimon, Michelle T., Phillips, Thomas, Daud, Adil I., McCalmont, Timothy H., LeBoit, Philip E., Ortiz-Urda, Susana
Publicado em 2013

Novel CARD11 Mutations in Human Cutaneous Squamous Cell Carcinoma Lead to Aberrant NF-κB Regulation

Por Watt, Stephen A., Purdie, Karin J., den Breems, Nicoline Y., Dimon, Michelle, Arron, Sarah T., McHugh, Angela T., Xue, Dylan J., Dayal, Jasbani H.S., Proby, Charlotte M., Harwood, Catherine A., Leigh, Irene M., South, Andrew P.
Publicado no Am J Pathol (2015)

NOTCH1 mutations occur early during cutaneous squamous cell carcinogenesis

Por South, Andrew P, Purdie, Karin J, Watt, Stephen A, Haldenby, Sam, den Breems, Nicoline, Dimon, Michelle, Arron, Sarah T, Kluk, Michael J, Aster, Jon C, McHugh, Angela, Xue, Dylan J, Dayal, Jasbani HS, Robinson, Kim S, Rizvi, SM Hasan, Proby, Charlotte M, Harwood, Catherine A, Leigh, Irene M
Publicado no J Invest Dermatol (2014)

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Por Earl, Dent, Bradnam, Keith, St. John, John, Darling, Aaron, Lin, Dawei, Fass, Joseph, Yu, Hung On Ken, Buffalo, Vince, Zerbino, Daniel R., Diekhans, Mark, Nguyen, Ngan, Ariyaratne, Pramila Nuwantha, Sung, Wing-Kin, Ning, Zemin, Haimel, Matthias, Simpson, Jared T., Fonseca, Nuno A., Birol, İnanç, Docking, T. Roderick, Ho, Isaac Y., Rokhsar, Daniel S., Chikhi, Rayan, Lavenier, Dominique, Chapuis, Guillaume, Naquin, Delphine, Maillet, Nicolas, Schatz, Michael C., Kelley, David R., Phillippy, Adam M., Koren, Sergey, Yang, Shiaw-Pyng, Wu, Wei, Chou, Wen-Chi, Srivastava, Anuj, Shaw, Timothy I., Ruby, J. Graham, Skewes-Cox, Peter, Betegon, Miguel, Dimon, Michelle T., Solovyev, Victor, Seledtsov, Igor, Kosarev, Petr, Vorobyev, Denis, Ramirez-Gonzalez, Ricardo, Leggett, Richard, MacLean, Dan, Xia, Fangfang, Luo, Ruibang, Li, Zhenyu, Xie, Yinlong, Liu, Binghang, Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J., Yin, Shuangye, Sharpe, Ted, Hall, Giles, Kersey, Paul J., Durbin, Richard, Jackman, Shaun D., Chapman, Jarrod A., Huang, Xiaoqiu, DeRisi, Joseph L., Caccamo, Mario, Li, Yingrui, Jaffe, David B., Green, Richard E., Haussler, David, Korf, Ian, Paten, Benedict
Publicado em 2011