The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures

od Davis, Fred P., Sali, Andrej
Izdano 2010

A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas

od Davis, Fred P., Eddy, Sean R.
Izdano 2009

Transcription Factors That Convert Adult Cell Identity Are Differentially Polycomb Repressed

od Davis, Fred P., Eddy, Sean R.
Izdano 2013

Localization of protein-binding sites within families of proteins

od Korkin, Dmitry, Davis, Fred P., Sali, Andrej
Izdano 2005

Cell type–specific genomics of Drosophila neurons

od Henry, Gilbert L., Davis, Fred P., Picard, Serge, Eddy, Sean R.
Izdano 2012

Gene expression analysis in the mouse brainstem identifies Cart and Nesfatin as neuropeptides coexpressed in the Calbindin-positive neurons of the Nucleus papilio

od Girard, Franck, von Siebenthal, Michelle, Davis, Fred P, Celio, Marco R
Izdano u Sleep (2020)

Host–pathogen protein interactions predicted by comparative modeling

od Davis, Fred P., Barkan, David T., Eswar, Narayanan, McKerrow, James H., Sali, Andrej
Izdano 2007

Protein complex compositions predicted by structural similarity

od Davis, Fred P., Braberg, Hannes, Shen, Min-Yi, Pieper, Ursula, Sali, Andrej, Madhusudhan, M.S.
Izdano 2006

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

od Marti-Renom, Marc A, Rossi, Andrea, Al-Shahrour, Fátima, Davis, Fred P, Pieper, Ursula, Dopazo, Joaquín, Sali, Andrej
Izdano 2007

Structural Modeling of Protein Interactions by Analogy: Application to PSD-95

od Korkin, Dmitry, Davis, Fred P, Alber, Frank, Luong, Tinh, Shen, Min-Yi, Lucic, Vladan, Kennedy, Mary B, Sali, Andrej
Izdano 2006

Odorant binding protein 69a connects social interaction to modulation of social responsiveness in Drosophila

od Bentzur, Assa, Shmueli, Anat, Omesi, Liora, Ryvkin, Julia, Knapp, Jon-Michael, Parnas, Moshe, Davis, Fred P., Shohat-Ophir, Galit
Izdano u PLoS Genet (2018)

A genetic, genomic, and computational resource for exploring neural circuit function

od Davis, Fred P, Nern, Aljoscha, Picard, Serge, Reiser, Michael B, Rubin, Gerald M, Eddy, Sean R, Henry, Gilbert L
Izdano u eLife (2020)

DBAli tools: mining the protein structure space

od Marti-Renom, Marc A., Pieper, Ursula, Madhusudhan, M. S., Rossi, Andrea, Eswar, Narayanan, Davis, Fred P., Al-Shahrour, Fátima, Dopazo, Joaquín, Sali, Andrej
Izdano 2007

Subset- and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells

od Villarino, Alejandro V., Sciumè, Giuseppe, Davis, Fred P., Iwata, Shigeru, Zitti, Beatrice, Robinson, Gertraud W., Hennighausen, Lothar, Kanno, Yuka, O’Shea, John J.
Izdano u J Exp Med (2017)

Developmental Acquisition of Regulomes Underlies Innate Lymphoid Cell Functionality

od Shih, Han-Yu, Sciumè, Giuseppe, Mikami, Yohei, Guo, Liying, Sun, Hong-Wei, Brooks, Stephen R., Urban, Joseph F., Davis, Fred P., Kanno, Yuka, O’Shea, John J.
Izdano u Cell (2016)

modbase, a database of annotated comparative protein structure models and associated resources

od Pieper, Ursula, Eswar, Narayanan, Webb, Ben M., Eramian, David, Kelly, Libusha, Barkan, David T., Carter, Hannah, Mankoo, Parminder, Karchin, Rachel, Marti-Renom, Marc A., Davis, Fred P., Sali, Andrej
Izdano 2009

MODBASE: a database of annotated comparative protein structure models and associated resources

od Pieper, Ursula, Eswar, Narayanan, Davis, Fred P., Braberg, Hannes, Madhusudhan, M. S., Rossi, Andrea, Marti-Renom, Marc, Karchin, Rachel, Webb, Ben M., Eramian, David, Shen, Min-Yi, Kelly, Libusha, Melo, Francisco, Sali, Andrej
Izdano 2006

A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency

od Xie, Liangqi, Torigoe, Sharon E., Xiao, Jifang, Mai, Daniel H., Li, Li, Davis, Fred P., Dong, Peng, Marie-Nelly, Herve, Grimm, Jonathan, Lavis, Luke, Darzacq, Xavier, Cattoglio, Claudia, Liu, Zhe, Tjian, Robert
Izdano u Genes Dev (2017)

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

od Mo, Alisa, Mukamel, Eran A., Davis, Fred P., Luo, Chongyuan, Henry, Gilbert L., Picard, Serge, Urich, Mark A., Nery, Joseph R., Sejnowski, Terrence J., Lister, Ryan, Eddy, Sean R., Ecker, Joseph R., Nathans, Jeremy
Izdano u Neuron (2015)

Epigenomic landscapes of retinal rods and cones

od Mo, Alisa, Luo, Chongyuan, Davis, Fred P, Mukamel, Eran A, Henry, Gilbert L, Nery, Joseph R, Urich, Mark A, Picard, Serge, Lister, Ryan, Eddy, Sean R, Beer, Michael A, Ecker, Joseph R, Nathans, Jeremy
Izdano u eLife (2016)