The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures

por Davis, Fred P., Sali, Andrej
Publicado em 2010

A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas

por Davis, Fred P., Eddy, Sean R.
Publicado em 2009

Transcription Factors That Convert Adult Cell Identity Are Differentially Polycomb Repressed

por Davis, Fred P., Eddy, Sean R.
Publicado em 2013

Localization of protein-binding sites within families of proteins

por Korkin, Dmitry, Davis, Fred P., Sali, Andrej
Publicado em 2005

Cell type–specific genomics of Drosophila neurons

por Henry, Gilbert L., Davis, Fred P., Picard, Serge, Eddy, Sean R.
Publicado em 2012

Gene expression analysis in the mouse brainstem identifies Cart and Nesfatin as neuropeptides coexpressed in the Calbindin-positive neurons of the Nucleus papilio

por Girard, Franck, von Siebenthal, Michelle, Davis, Fred P, Celio, Marco R
Publicado no Sleep (2020)

Host–pathogen protein interactions predicted by comparative modeling

por Davis, Fred P., Barkan, David T., Eswar, Narayanan, McKerrow, James H., Sali, Andrej
Publicado em 2007

Protein complex compositions predicted by structural similarity

por Davis, Fred P., Braberg, Hannes, Shen, Min-Yi, Pieper, Ursula, Sali, Andrej, Madhusudhan, M.S.
Publicado em 2006

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

por Marti-Renom, Marc A, Rossi, Andrea, Al-Shahrour, Fátima, Davis, Fred P, Pieper, Ursula, Dopazo, Joaquín, Sali, Andrej
Publicado em 2007

Structural Modeling of Protein Interactions by Analogy: Application to PSD-95

por Korkin, Dmitry, Davis, Fred P, Alber, Frank, Luong, Tinh, Shen, Min-Yi, Lucic, Vladan, Kennedy, Mary B, Sali, Andrej
Publicado em 2006

Odorant binding protein 69a connects social interaction to modulation of social responsiveness in Drosophila

por Bentzur, Assa, Shmueli, Anat, Omesi, Liora, Ryvkin, Julia, Knapp, Jon-Michael, Parnas, Moshe, Davis, Fred P., Shohat-Ophir, Galit
Publicado no PLoS Genet (2018)

A genetic, genomic, and computational resource for exploring neural circuit function

por Davis, Fred P, Nern, Aljoscha, Picard, Serge, Reiser, Michael B, Rubin, Gerald M, Eddy, Sean R, Henry, Gilbert L
Publicado no eLife (2020)

DBAli tools: mining the protein structure space

por Marti-Renom, Marc A., Pieper, Ursula, Madhusudhan, M. S., Rossi, Andrea, Eswar, Narayanan, Davis, Fred P., Al-Shahrour, Fátima, Dopazo, Joaquín, Sali, Andrej
Publicado em 2007

Subset- and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells

por Villarino, Alejandro V., Sciumè, Giuseppe, Davis, Fred P., Iwata, Shigeru, Zitti, Beatrice, Robinson, Gertraud W., Hennighausen, Lothar, Kanno, Yuka, O’Shea, John J.
Publicado no J Exp Med (2017)

Developmental Acquisition of Regulomes Underlies Innate Lymphoid Cell Functionality

por Shih, Han-Yu, Sciumè, Giuseppe, Mikami, Yohei, Guo, Liying, Sun, Hong-Wei, Brooks, Stephen R., Urban, Joseph F., Davis, Fred P., Kanno, Yuka, O’Shea, John J.
Publicado no Cell (2016)

modbase, a database of annotated comparative protein structure models and associated resources

por Pieper, Ursula, Eswar, Narayanan, Webb, Ben M., Eramian, David, Kelly, Libusha, Barkan, David T., Carter, Hannah, Mankoo, Parminder, Karchin, Rachel, Marti-Renom, Marc A., Davis, Fred P., Sali, Andrej
Publicado em 2009

MODBASE: a database of annotated comparative protein structure models and associated resources

por Pieper, Ursula, Eswar, Narayanan, Davis, Fred P., Braberg, Hannes, Madhusudhan, M. S., Rossi, Andrea, Marti-Renom, Marc, Karchin, Rachel, Webb, Ben M., Eramian, David, Shen, Min-Yi, Kelly, Libusha, Melo, Francisco, Sali, Andrej
Publicado em 2006

A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency

por Xie, Liangqi, Torigoe, Sharon E., Xiao, Jifang, Mai, Daniel H., Li, Li, Davis, Fred P., Dong, Peng, Marie-Nelly, Herve, Grimm, Jonathan, Lavis, Luke, Darzacq, Xavier, Cattoglio, Claudia, Liu, Zhe, Tjian, Robert
Publicado no Genes Dev (2017)

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

por Mo, Alisa, Mukamel, Eran A., Davis, Fred P., Luo, Chongyuan, Henry, Gilbert L., Picard, Serge, Urich, Mark A., Nery, Joseph R., Sejnowski, Terrence J., Lister, Ryan, Eddy, Sean R., Ecker, Joseph R., Nathans, Jeremy
Publicado no Neuron (2015)

Epigenomic landscapes of retinal rods and cones

por Mo, Alisa, Luo, Chongyuan, Davis, Fred P, Mukamel, Eran A, Henry, Gilbert L, Nery, Joseph R, Urich, Mark A, Picard, Serge, Lister, Ryan, Eddy, Sean R, Beer, Michael A, Ecker, Joseph R, Nathans, Jeremy
Publicado no eLife (2016)