The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures

por Davis, Fred P., Sali, Andrej
Publicado 2010

A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas

por Davis, Fred P., Eddy, Sean R.
Publicado 2009

Transcription Factors That Convert Adult Cell Identity Are Differentially Polycomb Repressed

por Davis, Fred P., Eddy, Sean R.
Publicado 2013

Localization of protein-binding sites within families of proteins

por Korkin, Dmitry, Davis, Fred P., Sali, Andrej
Publicado 2005

Cell type–specific genomics of Drosophila neurons

por Henry, Gilbert L., Davis, Fred P., Picard, Serge, Eddy, Sean R.
Publicado 2012

Gene expression analysis in the mouse brainstem identifies Cart and Nesfatin as neuropeptides coexpressed in the Calbindin-positive neurons of the Nucleus papilio

por Girard, Franck, von Siebenthal, Michelle, Davis, Fred P, Celio, Marco R
Publicado en Sleep (2020)

Host–pathogen protein interactions predicted by comparative modeling

por Davis, Fred P., Barkan, David T., Eswar, Narayanan, McKerrow, James H., Sali, Andrej
Publicado 2007

Protein complex compositions predicted by structural similarity

por Davis, Fred P., Braberg, Hannes, Shen, Min-Yi, Pieper, Ursula, Sali, Andrej, Madhusudhan, M.S.
Publicado 2006

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

por Marti-Renom, Marc A, Rossi, Andrea, Al-Shahrour, Fátima, Davis, Fred P, Pieper, Ursula, Dopazo, Joaquín, Sali, Andrej
Publicado 2007

Structural Modeling of Protein Interactions by Analogy: Application to PSD-95

por Korkin, Dmitry, Davis, Fred P, Alber, Frank, Luong, Tinh, Shen, Min-Yi, Lucic, Vladan, Kennedy, Mary B, Sali, Andrej
Publicado 2006

Odorant binding protein 69a connects social interaction to modulation of social responsiveness in Drosophila

por Bentzur, Assa, Shmueli, Anat, Omesi, Liora, Ryvkin, Julia, Knapp, Jon-Michael, Parnas, Moshe, Davis, Fred P., Shohat-Ophir, Galit
Publicado en PLoS Genet (2018)

A genetic, genomic, and computational resource for exploring neural circuit function

por Davis, Fred P, Nern, Aljoscha, Picard, Serge, Reiser, Michael B, Rubin, Gerald M, Eddy, Sean R, Henry, Gilbert L
Publicado en eLife (2020)

DBAli tools: mining the protein structure space

por Marti-Renom, Marc A., Pieper, Ursula, Madhusudhan, M. S., Rossi, Andrea, Eswar, Narayanan, Davis, Fred P., Al-Shahrour, Fátima, Dopazo, Joaquín, Sali, Andrej
Publicado 2007

Subset- and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells

por Villarino, Alejandro V., Sciumè, Giuseppe, Davis, Fred P., Iwata, Shigeru, Zitti, Beatrice, Robinson, Gertraud W., Hennighausen, Lothar, Kanno, Yuka, O’Shea, John J.
Publicado en J Exp Med (2017)

Developmental Acquisition of Regulomes Underlies Innate Lymphoid Cell Functionality

por Shih, Han-Yu, Sciumè, Giuseppe, Mikami, Yohei, Guo, Liying, Sun, Hong-Wei, Brooks, Stephen R., Urban, Joseph F., Davis, Fred P., Kanno, Yuka, O’Shea, John J.
Publicado en Cell (2016)

modbase, a database of annotated comparative protein structure models and associated resources

por Pieper, Ursula, Eswar, Narayanan, Webb, Ben M., Eramian, David, Kelly, Libusha, Barkan, David T., Carter, Hannah, Mankoo, Parminder, Karchin, Rachel, Marti-Renom, Marc A., Davis, Fred P., Sali, Andrej
Publicado 2009

MODBASE: a database of annotated comparative protein structure models and associated resources

por Pieper, Ursula, Eswar, Narayanan, Davis, Fred P., Braberg, Hannes, Madhusudhan, M. S., Rossi, Andrea, Marti-Renom, Marc, Karchin, Rachel, Webb, Ben M., Eramian, David, Shen, Min-Yi, Kelly, Libusha, Melo, Francisco, Sali, Andrej
Publicado 2006

A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency

por Xie, Liangqi, Torigoe, Sharon E., Xiao, Jifang, Mai, Daniel H., Li, Li, Davis, Fred P., Dong, Peng, Marie-Nelly, Herve, Grimm, Jonathan, Lavis, Luke, Darzacq, Xavier, Cattoglio, Claudia, Liu, Zhe, Tjian, Robert
Publicado en Genes Dev (2017)

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

por Mo, Alisa, Mukamel, Eran A., Davis, Fred P., Luo, Chongyuan, Henry, Gilbert L., Picard, Serge, Urich, Mark A., Nery, Joseph R., Sejnowski, Terrence J., Lister, Ryan, Eddy, Sean R., Ecker, Joseph R., Nathans, Jeremy
Publicado en Neuron (2015)

Epigenomic landscapes of retinal rods and cones

por Mo, Alisa, Luo, Chongyuan, Davis, Fred P, Mukamel, Eran A, Henry, Gilbert L, Nery, Joseph R, Urich, Mark A, Picard, Serge, Lister, Ryan, Eddy, Sean R, Beer, Michael A, Ecker, Joseph R, Nathans, Jeremy
Publicado en eLife (2016)