Isobar(PTM): A software tool for the quantitative analysis of post-translationally modified proteins()

av Breitwieser, Florian P., Colinge, Jacques
Publicerad 2013

Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification

av Breitwieser, Florian P, Salzberg, Steven L
I publikationen Bioinformatics (2019)

A review of methods and databases for metagenomic classification and assembly

av Breitwieser, Florian P, Lu, Jennifer, Salzberg, Steven L
I publikationen Brief Bioinform (2017)

Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection

av Breitwieser, Florian P., Pardo, Carlos A., Salzberg, Steven L.
I publikationen F1000Res (2015)

Centrifuge: rapid and sensitive classification of metagenomic sequences

av Kim, Daehwan, Song, Li, Breitwieser, Florian P., Salzberg, Steven L.
I publikationen Genome Res (2016)

Human contamination in bacterial genomes has created thousands of spurious proteins

av Breitwieser, Florian P., Pertea, Mihaela, Zimin, Aleksey V., Salzberg, Steven L.
I publikationen Genome Res (2019)

A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib

av Burkard, Thomas R., Rix, Uwe, Breitwieser, Florian P., Superti-Furga, Giulio, Colinge, Jacques
Publicerad 2010

Building and exploring an integrated human kinase network: Global organization and medical entry points()

av Colinge, Jacques, César-Razquin, Adrián, Huber, Kilian, Breitwieser, Florian P., Májek, Peter, Superti-Furga, Giulio
Publicerad 2014

Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing

av Li, Zhigang, Breitwieser, Florian P., Lu, Jennifer, Jun, Albert S., Asnaghi, Laura, Salzberg, Steven L., Eberhart, Charles G.
I publikationen Invest Ophthalmol Vis Sci (2018)

Initial characterization of the human central proteome

av Burkard, Thomas R, Planyavsky, Melanie, Kaupe, Ines, Breitwieser, Florian P, Bürckstümmer, Tilmann, Bennett, Keiryn L, Superti-Furga, Giulio, Colinge, Jacques
Publicerad 2011

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

av Pertea, Mihaela, Shumate, Alaina, Pertea, Geo, Varabyou, Ales, Breitwieser, Florian P., Chang, Yu-Chi, Madugundu, Anil K., Pandey, Akhilesh, Salzberg, Steven L.
I publikationen Genome Biol (2018)

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs

av Kandathil, Abraham J., Breitwieser, Florian P., Sachithanandham, Jaiprasath, Robinson, Matthew, Mehta, Shruti H., Timp, Winston, Salzberg, Steven L., Thomas, David L., Balagopal, Ashwin
I publikationen Ann Intern Med (2017)

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

av Mainali, Kumar P., Bewick, Sharon, Thielen, Peter, Mehoke, Thomas, Breitwieser, Florian P., Paudel, Shishir, Adhikari, Arjun, Wolfe, Joshua, Slud, Eric V., Karig, David, Fagan, William F.
I publikationen PLoS One (2017)

Intracellular HIV-1 RNA and CD4+ T cell Activation in Patients Starting Antiretrovirals

av EL-DIWANY, Ramy, BREITWIESER, Florian P., SOLIMAN, Mary, SKAIST, Alyza M., SRIKRISHNA, Geetha, BLANKSON, Joel N., RAY, Stuart C., WHEELAN, Sarah J., THOMAS, David L., BALAGOPAL, Ashwin
I publikationen AIDS (2017)

Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics

av Gridling, Manuela, Ficarro, Scott B., Breitwieser, Florian P., Song, Lanxi, Parapatics, Katja, Colinge, Jacques, Haura, Eric B., Marto, Jarrod A., Superti-Furga, Giulio, Bennett, Keiryn L., Rix, Uwe
I publikationen Mol Cancer Ther (2014)

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics

av Simner, Patricia J., Miller, Heather B., Breitwieser, Florian P., Pinilla Monsalve, Gabriel, Pardo, Carlos A., Salzberg, Steven L., Sears, Cynthia L., Thomas, David L., Eberhart, Charles G., Carroll, Karen C.
I publikationen J Clin Microbiol (2018)

Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system

av Salzberg, Steven L., Breitwieser, Florian P., Kumar, Anupama, Hao, Haiping, Burger, Peter, Rodriguez, Fausto J., Lim, Michael, Quiñones-Hinojosa, Alfredo, Gallia, Gary L., Tornheim, Jeffrey A., Melia, Michael T., Sears, Cynthia L., Pardo, Carlos A.
I publikationen Neurol Neuroimmunol Neuroinflamm (2016)

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML

av Winter, Georg E, Rix, Uwe, Carlson, Scott M, Gleixner, Karoline V, Grebien, Florian, Gridling, Manuela, Müller, André C, Breitwieser, Florian P, Bilban, Martin, Colinge, Jacques, Valent, Peter, Bennett, Keiryn L, White, Forest M, Superti-Furga, Giulio
Publicerad 2012

CD4(+) T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2

av Boucheron, Nicole, Tschismarov, Roland, Goeschl, Lisa, Moser, Mirjam A., Lagger, Sabine, Sakaguchi, Shinya, Winter, Mircea, Lenz, Florian, Vitko, Dijana, Breitwieser, Florian P., Müller, Lena, Hassan, Hammad, Bennett, Keiryn L., Colinge, Jacques, Schreiner, Wolfgang, Egawa, Takeshi, Taniuchi, Ichiro, Matthias, Patrick, Seiser, Christian, Ellmeier, Wilfried
I publikationen Nat Immunol (2014)

The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

av Heinz, Leonhard X., Baumann, Christoph L., Köberlin, Marielle S., Snijder, Berend, Gawish, Riem, Shui, Guanghou, Sharif, Omar, Aspalter, Irene M., Müller, André C., Kandasamy, Richard K., Breitwieser, Florian P., Pichlmair, Andreas, Bruckner, Manuela, Rebsamen, Manuele, Blüml, Stephan, Karonitsch, Thomas, Fauster, Astrid, Colinge, Jacques, Bennett, Keiryn L., Knapp, Sylvia, Wenk, Markus R., Superti-Furga, Giulio
I publikationen Cell Rep (2015)