Isobar(PTM): A software tool for the quantitative analysis of post-translationally modified proteins()

Por Breitwieser, Florian P., Colinge, Jacques
Publicado em 2013

A review of methods and databases for metagenomic classification and assembly

Por Breitwieser, Florian P, Lu, Jennifer, Salzberg, Steven L
Publicado no Brief Bioinform (2017)

Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection

Por Breitwieser, Florian P., Pardo, Carlos A., Salzberg, Steven L.
Publicado no F1000Res (2015)

Centrifuge: rapid and sensitive classification of metagenomic sequences

Por Kim, Daehwan, Song, Li, Breitwieser, Florian P., Salzberg, Steven L.
Publicado no Genome Res (2016)

Human contamination in bacterial genomes has created thousands of spurious proteins

Por Breitwieser, Florian P., Pertea, Mihaela, Zimin, Aleksey V., Salzberg, Steven L.
Publicado no Genome Res (2019)

A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib

Por Burkard, Thomas R., Rix, Uwe, Breitwieser, Florian P., Superti-Furga, Giulio, Colinge, Jacques
Publicado em 2010

Building and exploring an integrated human kinase network: Global organization and medical entry points()

Por Colinge, Jacques, César-Razquin, Adrián, Huber, Kilian, Breitwieser, Florian P., Májek, Peter, Superti-Furga, Giulio
Publicado em 2014

Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing

Por Li, Zhigang, Breitwieser, Florian P., Lu, Jennifer, Jun, Albert S., Asnaghi, Laura, Salzberg, Steven L., Eberhart, Charles G.
Publicado no Invest Ophthalmol Vis Sci (2018)

Initial characterization of the human central proteome

Por Burkard, Thomas R, Planyavsky, Melanie, Kaupe, Ines, Breitwieser, Florian P, Bürckstümmer, Tilmann, Bennett, Keiryn L, Superti-Furga, Giulio, Colinge, Jacques
Publicado em 2011

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

Por Pertea, Mihaela, Shumate, Alaina, Pertea, Geo, Varabyou, Ales, Breitwieser, Florian P., Chang, Yu-Chi, Madugundu, Anil K., Pandey, Akhilesh, Salzberg, Steven L.
Publicado no Genome Biol (2018)

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs

Por Kandathil, Abraham J., Breitwieser, Florian P., Sachithanandham, Jaiprasath, Robinson, Matthew, Mehta, Shruti H., Timp, Winston, Salzberg, Steven L., Thomas, David L., Balagopal, Ashwin
Publicado no Ann Intern Med (2017)

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

Por Mainali, Kumar P., Bewick, Sharon, Thielen, Peter, Mehoke, Thomas, Breitwieser, Florian P., Paudel, Shishir, Adhikari, Arjun, Wolfe, Joshua, Slud, Eric V., Karig, David, Fagan, William F.
Publicado no PLoS One (2017)

Intracellular HIV-1 RNA and CD4+ T cell Activation in Patients Starting Antiretrovirals

Por EL-DIWANY, Ramy, BREITWIESER, Florian P., SOLIMAN, Mary, SKAIST, Alyza M., SRIKRISHNA, Geetha, BLANKSON, Joel N., RAY, Stuart C., WHEELAN, Sarah J., THOMAS, David L., BALAGOPAL, Ashwin
Publicado no AIDS (2017)

Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics

Por Gridling, Manuela, Ficarro, Scott B., Breitwieser, Florian P., Song, Lanxi, Parapatics, Katja, Colinge, Jacques, Haura, Eric B., Marto, Jarrod A., Superti-Furga, Giulio, Bennett, Keiryn L., Rix, Uwe
Publicado no Mol Cancer Ther (2014)

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics

Por Simner, Patricia J., Miller, Heather B., Breitwieser, Florian P., Pinilla Monsalve, Gabriel, Pardo, Carlos A., Salzberg, Steven L., Sears, Cynthia L., Thomas, David L., Eberhart, Charles G., Carroll, Karen C.
Publicado no J Clin Microbiol (2018)

Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system

Por Salzberg, Steven L., Breitwieser, Florian P., Kumar, Anupama, Hao, Haiping, Burger, Peter, Rodriguez, Fausto J., Lim, Michael, Quiñones-Hinojosa, Alfredo, Gallia, Gary L., Tornheim, Jeffrey A., Melia, Michael T., Sears, Cynthia L., Pardo, Carlos A.
Publicado no Neurol Neuroimmunol Neuroinflamm (2016)

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML

Por Winter, Georg E, Rix, Uwe, Carlson, Scott M, Gleixner, Karoline V, Grebien, Florian, Gridling, Manuela, Müller, André C, Breitwieser, Florian P, Bilban, Martin, Colinge, Jacques, Valent, Peter, Bennett, Keiryn L, White, Forest M, Superti-Furga, Giulio
Publicado em 2012

CD4(+) T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2

Por Boucheron, Nicole, Tschismarov, Roland, Goeschl, Lisa, Moser, Mirjam A., Lagger, Sabine, Sakaguchi, Shinya, Winter, Mircea, Lenz, Florian, Vitko, Dijana, Breitwieser, Florian P., Müller, Lena, Hassan, Hammad, Bennett, Keiryn L., Colinge, Jacques, Schreiner, Wolfgang, Egawa, Takeshi, Taniuchi, Ichiro, Matthias, Patrick, Seiser, Christian, Ellmeier, Wilfried
Publicado no Nat Immunol (2014)

The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

Por Heinz, Leonhard X., Baumann, Christoph L., Köberlin, Marielle S., Snijder, Berend, Gawish, Riem, Shui, Guanghou, Sharif, Omar, Aspalter, Irene M., Müller, André C., Kandasamy, Richard K., Breitwieser, Florian P., Pichlmair, Andreas, Bruckner, Manuela, Rebsamen, Manuele, Blüml, Stephan, Karonitsch, Thomas, Fauster, Astrid, Colinge, Jacques, Bennett, Keiryn L., Knapp, Sylvia, Wenk, Markus R., Superti-Furga, Giulio
Publicado no Cell Rep (2015)

Germline RBBP6 mutations in familial myeloproliferative neoplasms

Por Harutyunyan, Ashot S., Giambruno, Roberto, Krendl, Christian, Stukalov, Alexey, Klampfl, Thorsten, Berg, Tiina, Chen, Doris, Milosevic Feenstra, Jelena D., Jäger, Roland, Gisslinger, Bettina, Gisslinger, Heinz, Rumi, Elisa, Passamonti, Francesco, Pietra, Daniela, Müller, André C., Parapatics, Katja, Breitwieser, Florian P., Herrmann, Richard, Colinge, Jacques, Bennett, Keiryn L., Superti-Furga, Giulio, Cazzola, Mario, Hammond, Emma, Kralovics, Robert
Publicado no Blood (2016)