Isobar(PTM): A software tool for the quantitative analysis of post-translationally modified proteins()

di Breitwieser, Florian P., Colinge, Jacques
Pubblicazione 2013

Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification

di Breitwieser, Florian P, Salzberg, Steven L
Pubblicato in Bioinformatics (2019)

A review of methods and databases for metagenomic classification and assembly

di Breitwieser, Florian P, Lu, Jennifer, Salzberg, Steven L
Pubblicato in Brief Bioinform (2017)

Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection

di Breitwieser, Florian P., Pardo, Carlos A., Salzberg, Steven L.
Pubblicato in F1000Res (2015)

Centrifuge: rapid and sensitive classification of metagenomic sequences

di Kim, Daehwan, Song, Li, Breitwieser, Florian P., Salzberg, Steven L.
Pubblicato in Genome Res (2016)

Human contamination in bacterial genomes has created thousands of spurious proteins

di Breitwieser, Florian P., Pertea, Mihaela, Zimin, Aleksey V., Salzberg, Steven L.
Pubblicato in Genome Res (2019)

A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib

di Burkard, Thomas R., Rix, Uwe, Breitwieser, Florian P., Superti-Furga, Giulio, Colinge, Jacques
Pubblicazione 2010

Building and exploring an integrated human kinase network: Global organization and medical entry points()

di Colinge, Jacques, César-Razquin, Adrián, Huber, Kilian, Breitwieser, Florian P., Májek, Peter, Superti-Furga, Giulio
Pubblicazione 2014

Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing

di Li, Zhigang, Breitwieser, Florian P., Lu, Jennifer, Jun, Albert S., Asnaghi, Laura, Salzberg, Steven L., Eberhart, Charles G.
Pubblicato in Invest Ophthalmol Vis Sci (2018)

Initial characterization of the human central proteome

di Burkard, Thomas R, Planyavsky, Melanie, Kaupe, Ines, Breitwieser, Florian P, Bürckstümmer, Tilmann, Bennett, Keiryn L, Superti-Furga, Giulio, Colinge, Jacques
Pubblicazione 2011

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

di Pertea, Mihaela, Shumate, Alaina, Pertea, Geo, Varabyou, Ales, Breitwieser, Florian P., Chang, Yu-Chi, Madugundu, Anil K., Pandey, Akhilesh, Salzberg, Steven L.
Pubblicato in Genome Biol (2018)

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs

di Kandathil, Abraham J., Breitwieser, Florian P., Sachithanandham, Jaiprasath, Robinson, Matthew, Mehta, Shruti H., Timp, Winston, Salzberg, Steven L., Thomas, David L., Balagopal, Ashwin
Pubblicato in Ann Intern Med (2017)

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

di Mainali, Kumar P., Bewick, Sharon, Thielen, Peter, Mehoke, Thomas, Breitwieser, Florian P., Paudel, Shishir, Adhikari, Arjun, Wolfe, Joshua, Slud, Eric V., Karig, David, Fagan, William F.
Pubblicato in PLoS One (2017)

Intracellular HIV-1 RNA and CD4+ T cell Activation in Patients Starting Antiretrovirals

di EL-DIWANY, Ramy, BREITWIESER, Florian P., SOLIMAN, Mary, SKAIST, Alyza M., SRIKRISHNA, Geetha, BLANKSON, Joel N., RAY, Stuart C., WHEELAN, Sarah J., THOMAS, David L., BALAGOPAL, Ashwin
Pubblicato in AIDS (2017)

Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics

di Gridling, Manuela, Ficarro, Scott B., Breitwieser, Florian P., Song, Lanxi, Parapatics, Katja, Colinge, Jacques, Haura, Eric B., Marto, Jarrod A., Superti-Furga, Giulio, Bennett, Keiryn L., Rix, Uwe
Pubblicato in Mol Cancer Ther (2014)

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics

di Simner, Patricia J., Miller, Heather B., Breitwieser, Florian P., Pinilla Monsalve, Gabriel, Pardo, Carlos A., Salzberg, Steven L., Sears, Cynthia L., Thomas, David L., Eberhart, Charles G., Carroll, Karen C.
Pubblicato in J Clin Microbiol (2018)

Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system

di Salzberg, Steven L., Breitwieser, Florian P., Kumar, Anupama, Hao, Haiping, Burger, Peter, Rodriguez, Fausto J., Lim, Michael, Quiñones-Hinojosa, Alfredo, Gallia, Gary L., Tornheim, Jeffrey A., Melia, Michael T., Sears, Cynthia L., Pardo, Carlos A.
Pubblicato in Neurol Neuroimmunol Neuroinflamm (2016)

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML

di Winter, Georg E, Rix, Uwe, Carlson, Scott M, Gleixner, Karoline V, Grebien, Florian, Gridling, Manuela, Müller, André C, Breitwieser, Florian P, Bilban, Martin, Colinge, Jacques, Valent, Peter, Bennett, Keiryn L, White, Forest M, Superti-Furga, Giulio
Pubblicazione 2012

CD4(+) T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2

di Boucheron, Nicole, Tschismarov, Roland, Goeschl, Lisa, Moser, Mirjam A., Lagger, Sabine, Sakaguchi, Shinya, Winter, Mircea, Lenz, Florian, Vitko, Dijana, Breitwieser, Florian P., Müller, Lena, Hassan, Hammad, Bennett, Keiryn L., Colinge, Jacques, Schreiner, Wolfgang, Egawa, Takeshi, Taniuchi, Ichiro, Matthias, Patrick, Seiser, Christian, Ellmeier, Wilfried
Pubblicato in Nat Immunol (2014)

The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

di Heinz, Leonhard X., Baumann, Christoph L., Köberlin, Marielle S., Snijder, Berend, Gawish, Riem, Shui, Guanghou, Sharif, Omar, Aspalter, Irene M., Müller, André C., Kandasamy, Richard K., Breitwieser, Florian P., Pichlmair, Andreas, Bruckner, Manuela, Rebsamen, Manuele, Blüml, Stephan, Karonitsch, Thomas, Fauster, Astrid, Colinge, Jacques, Bennett, Keiryn L., Knapp, Sylvia, Wenk, Markus R., Superti-Furga, Giulio
Pubblicato in Cell Rep (2015)