Isobar(PTM): A software tool for the quantitative analysis of post-translationally modified proteins()

Autor Breitwieser, Florian P., Colinge, Jacques
Vydáno 2013

A review of methods and databases for metagenomic classification and assembly

Autor Breitwieser, Florian P, Lu, Jennifer, Salzberg, Steven L
Vydáno v Brief Bioinform (2017)

Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection

Autor Breitwieser, Florian P., Pardo, Carlos A., Salzberg, Steven L.
Vydáno v F1000Res (2015)

Centrifuge: rapid and sensitive classification of metagenomic sequences

Autor Kim, Daehwan, Song, Li, Breitwieser, Florian P., Salzberg, Steven L.
Vydáno v Genome Res (2016)

Human contamination in bacterial genomes has created thousands of spurious proteins

Autor Breitwieser, Florian P., Pertea, Mihaela, Zimin, Aleksey V., Salzberg, Steven L.
Vydáno v Genome Res (2019)

A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib

Autor Burkard, Thomas R., Rix, Uwe, Breitwieser, Florian P., Superti-Furga, Giulio, Colinge, Jacques
Vydáno 2010

Building and exploring an integrated human kinase network: Global organization and medical entry points()

Autor Colinge, Jacques, César-Razquin, Adrián, Huber, Kilian, Breitwieser, Florian P., Májek, Peter, Superti-Furga, Giulio
Vydáno 2014

Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing

Autor Li, Zhigang, Breitwieser, Florian P., Lu, Jennifer, Jun, Albert S., Asnaghi, Laura, Salzberg, Steven L., Eberhart, Charles G.
Vydáno v Invest Ophthalmol Vis Sci (2018)

Initial characterization of the human central proteome

Autor Burkard, Thomas R, Planyavsky, Melanie, Kaupe, Ines, Breitwieser, Florian P, Bürckstümmer, Tilmann, Bennett, Keiryn L, Superti-Furga, Giulio, Colinge, Jacques
Vydáno 2011

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

Autor Pertea, Mihaela, Shumate, Alaina, Pertea, Geo, Varabyou, Ales, Breitwieser, Florian P., Chang, Yu-Chi, Madugundu, Anil K., Pandey, Akhilesh, Salzberg, Steven L.
Vydáno v Genome Biol (2018)

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs

Autor Kandathil, Abraham J., Breitwieser, Florian P., Sachithanandham, Jaiprasath, Robinson, Matthew, Mehta, Shruti H., Timp, Winston, Salzberg, Steven L., Thomas, David L., Balagopal, Ashwin
Vydáno v Ann Intern Med (2017)

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

Autor Mainali, Kumar P., Bewick, Sharon, Thielen, Peter, Mehoke, Thomas, Breitwieser, Florian P., Paudel, Shishir, Adhikari, Arjun, Wolfe, Joshua, Slud, Eric V., Karig, David, Fagan, William F.
Vydáno v PLoS One (2017)

Intracellular HIV-1 RNA and CD4+ T cell Activation in Patients Starting Antiretrovirals

Autor EL-DIWANY, Ramy, BREITWIESER, Florian P., SOLIMAN, Mary, SKAIST, Alyza M., SRIKRISHNA, Geetha, BLANKSON, Joel N., RAY, Stuart C., WHEELAN, Sarah J., THOMAS, David L., BALAGOPAL, Ashwin
Vydáno v AIDS (2017)

Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics

Autor Gridling, Manuela, Ficarro, Scott B., Breitwieser, Florian P., Song, Lanxi, Parapatics, Katja, Colinge, Jacques, Haura, Eric B., Marto, Jarrod A., Superti-Furga, Giulio, Bennett, Keiryn L., Rix, Uwe
Vydáno v Mol Cancer Ther (2014)

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics

Autor Simner, Patricia J., Miller, Heather B., Breitwieser, Florian P., Pinilla Monsalve, Gabriel, Pardo, Carlos A., Salzberg, Steven L., Sears, Cynthia L., Thomas, David L., Eberhart, Charles G., Carroll, Karen C.
Vydáno v J Clin Microbiol (2018)

Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system

Autor Salzberg, Steven L., Breitwieser, Florian P., Kumar, Anupama, Hao, Haiping, Burger, Peter, Rodriguez, Fausto J., Lim, Michael, Quiñones-Hinojosa, Alfredo, Gallia, Gary L., Tornheim, Jeffrey A., Melia, Michael T., Sears, Cynthia L., Pardo, Carlos A.
Vydáno v Neurol Neuroimmunol Neuroinflamm (2016)

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML

Autor Winter, Georg E, Rix, Uwe, Carlson, Scott M, Gleixner, Karoline V, Grebien, Florian, Gridling, Manuela, Müller, André C, Breitwieser, Florian P, Bilban, Martin, Colinge, Jacques, Valent, Peter, Bennett, Keiryn L, White, Forest M, Superti-Furga, Giulio
Vydáno 2012

CD4(+) T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2

Autor Boucheron, Nicole, Tschismarov, Roland, Goeschl, Lisa, Moser, Mirjam A., Lagger, Sabine, Sakaguchi, Shinya, Winter, Mircea, Lenz, Florian, Vitko, Dijana, Breitwieser, Florian P., Müller, Lena, Hassan, Hammad, Bennett, Keiryn L., Colinge, Jacques, Schreiner, Wolfgang, Egawa, Takeshi, Taniuchi, Ichiro, Matthias, Patrick, Seiser, Christian, Ellmeier, Wilfried
Vydáno v Nat Immunol (2014)

The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

Autor Heinz, Leonhard X., Baumann, Christoph L., Köberlin, Marielle S., Snijder, Berend, Gawish, Riem, Shui, Guanghou, Sharif, Omar, Aspalter, Irene M., Müller, André C., Kandasamy, Richard K., Breitwieser, Florian P., Pichlmair, Andreas, Bruckner, Manuela, Rebsamen, Manuele, Blüml, Stephan, Karonitsch, Thomas, Fauster, Astrid, Colinge, Jacques, Bennett, Keiryn L., Knapp, Sylvia, Wenk, Markus R., Superti-Furga, Giulio
Vydáno v Cell Rep (2015)

Germline RBBP6 mutations in familial myeloproliferative neoplasms

Autor Harutyunyan, Ashot S., Giambruno, Roberto, Krendl, Christian, Stukalov, Alexey, Klampfl, Thorsten, Berg, Tiina, Chen, Doris, Milosevic Feenstra, Jelena D., Jäger, Roland, Gisslinger, Bettina, Gisslinger, Heinz, Rumi, Elisa, Passamonti, Francesco, Pietra, Daniela, Müller, André C., Parapatics, Katja, Breitwieser, Florian P., Herrmann, Richard, Colinge, Jacques, Bennett, Keiryn L., Superti-Furga, Giulio, Cazzola, Mario, Hammond, Emma, Kralovics, Robert
Vydáno v Blood (2016)