Isobar(PTM): A software tool for the quantitative analysis of post-translationally modified proteins()

অনুযায়ী Breitwieser, Florian P., Colinge, Jacques
প্রকাশিত 2013

Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification

অনুযায়ী Breitwieser, Florian P, Salzberg, Steven L
প্রকাশিত Bioinformatics (2019)

A review of methods and databases for metagenomic classification and assembly

অনুযায়ী Breitwieser, Florian P, Lu, Jennifer, Salzberg, Steven L
প্রকাশিত Brief Bioinform (2017)

Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection

অনুযায়ী Breitwieser, Florian P., Pardo, Carlos A., Salzberg, Steven L.
প্রকাশিত F1000Res (2015)

Centrifuge: rapid and sensitive classification of metagenomic sequences

অনুযায়ী Kim, Daehwan, Song, Li, Breitwieser, Florian P., Salzberg, Steven L.
প্রকাশিত Genome Res (2016)

Human contamination in bacterial genomes has created thousands of spurious proteins

অনুযায়ী Breitwieser, Florian P., Pertea, Mihaela, Zimin, Aleksey V., Salzberg, Steven L.
প্রকাশিত Genome Res (2019)

A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib

অনুযায়ী Burkard, Thomas R., Rix, Uwe, Breitwieser, Florian P., Superti-Furga, Giulio, Colinge, Jacques
প্রকাশিত 2010

Building and exploring an integrated human kinase network: Global organization and medical entry points()

অনুযায়ী Colinge, Jacques, César-Razquin, Adrián, Huber, Kilian, Breitwieser, Florian P., Májek, Peter, Superti-Furga, Giulio
প্রকাশিত 2014

Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing

অনুযায়ী Li, Zhigang, Breitwieser, Florian P., Lu, Jennifer, Jun, Albert S., Asnaghi, Laura, Salzberg, Steven L., Eberhart, Charles G.
প্রকাশিত Invest Ophthalmol Vis Sci (2018)

Initial characterization of the human central proteome

অনুযায়ী Burkard, Thomas R, Planyavsky, Melanie, Kaupe, Ines, Breitwieser, Florian P, Bürckstümmer, Tilmann, Bennett, Keiryn L, Superti-Furga, Giulio, Colinge, Jacques
প্রকাশিত 2011

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

অনুযায়ী Pertea, Mihaela, Shumate, Alaina, Pertea, Geo, Varabyou, Ales, Breitwieser, Florian P., Chang, Yu-Chi, Madugundu, Anil K., Pandey, Akhilesh, Salzberg, Steven L.
প্রকাশিত Genome Biol (2018)

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs

অনুযায়ী Kandathil, Abraham J., Breitwieser, Florian P., Sachithanandham, Jaiprasath, Robinson, Matthew, Mehta, Shruti H., Timp, Winston, Salzberg, Steven L., Thomas, David L., Balagopal, Ashwin
প্রকাশিত Ann Intern Med (2017)

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

অনুযায়ী Mainali, Kumar P., Bewick, Sharon, Thielen, Peter, Mehoke, Thomas, Breitwieser, Florian P., Paudel, Shishir, Adhikari, Arjun, Wolfe, Joshua, Slud, Eric V., Karig, David, Fagan, William F.
প্রকাশিত PLoS One (2017)

Intracellular HIV-1 RNA and CD4+ T cell Activation in Patients Starting Antiretrovirals

অনুযায়ী EL-DIWANY, Ramy, BREITWIESER, Florian P., SOLIMAN, Mary, SKAIST, Alyza M., SRIKRISHNA, Geetha, BLANKSON, Joel N., RAY, Stuart C., WHEELAN, Sarah J., THOMAS, David L., BALAGOPAL, Ashwin
প্রকাশিত AIDS (2017)

Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics

অনুযায়ী Gridling, Manuela, Ficarro, Scott B., Breitwieser, Florian P., Song, Lanxi, Parapatics, Katja, Colinge, Jacques, Haura, Eric B., Marto, Jarrod A., Superti-Furga, Giulio, Bennett, Keiryn L., Rix, Uwe
প্রকাশিত Mol Cancer Ther (2014)

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics

অনুযায়ী Simner, Patricia J., Miller, Heather B., Breitwieser, Florian P., Pinilla Monsalve, Gabriel, Pardo, Carlos A., Salzberg, Steven L., Sears, Cynthia L., Thomas, David L., Eberhart, Charles G., Carroll, Karen C.
প্রকাশিত J Clin Microbiol (2018)

Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system

অনুযায়ী Salzberg, Steven L., Breitwieser, Florian P., Kumar, Anupama, Hao, Haiping, Burger, Peter, Rodriguez, Fausto J., Lim, Michael, Quiñones-Hinojosa, Alfredo, Gallia, Gary L., Tornheim, Jeffrey A., Melia, Michael T., Sears, Cynthia L., Pardo, Carlos A.
প্রকাশিত Neurol Neuroimmunol Neuroinflamm (2016)

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML

অনুযায়ী Winter, Georg E, Rix, Uwe, Carlson, Scott M, Gleixner, Karoline V, Grebien, Florian, Gridling, Manuela, Müller, André C, Breitwieser, Florian P, Bilban, Martin, Colinge, Jacques, Valent, Peter, Bennett, Keiryn L, White, Forest M, Superti-Furga, Giulio
প্রকাশিত 2012

CD4(+) T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2

অনুযায়ী Boucheron, Nicole, Tschismarov, Roland, Goeschl, Lisa, Moser, Mirjam A., Lagger, Sabine, Sakaguchi, Shinya, Winter, Mircea, Lenz, Florian, Vitko, Dijana, Breitwieser, Florian P., Müller, Lena, Hassan, Hammad, Bennett, Keiryn L., Colinge, Jacques, Schreiner, Wolfgang, Egawa, Takeshi, Taniuchi, Ichiro, Matthias, Patrick, Seiser, Christian, Ellmeier, Wilfried
প্রকাশিত Nat Immunol (2014)

The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

অনুযায়ী Heinz, Leonhard X., Baumann, Christoph L., Köberlin, Marielle S., Snijder, Berend, Gawish, Riem, Shui, Guanghou, Sharif, Omar, Aspalter, Irene M., Müller, André C., Kandasamy, Richard K., Breitwieser, Florian P., Pichlmair, Andreas, Bruckner, Manuela, Rebsamen, Manuele, Blüml, Stephan, Karonitsch, Thomas, Fauster, Astrid, Colinge, Jacques, Bennett, Keiryn L., Knapp, Sylvia, Wenk, Markus R., Superti-Furga, Giulio
প্রকাশিত Cell Rep (2015)