alona: a web server for single-cell RNA-seq analysis

per Franzén, Oscar, Björkegren, Johan L M
Publicat a Bioinformatics (2020)

Model-based clustering of multi-tissue gene expression data

per Erola, Pau, Björkegren, Johan L M, Michoel, Tom
Publicat a Bioinformatics (2020)

PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data

per Franzén, Oscar, Gan, Li-Ming, Björkegren, Johan L M
Publicat a Database (Oxford) (2019)

Genome-Wide Significant Loci: How Important Are They?: Systems Genetics to Understand Heritability of Coronary Artery Disease and Other Common Complex Disorders

per Björkegren, Johan L.M., Kovacic, Jason C., Dudley, Joel T., Schadt, Eric E.
Publicat a J Am Coll Cardiol (2015)

Multiple independent mechanisms link gene polymorphisms in the region of ZEB2 with risk of coronary artery disease

per Ma, Lijiang, Chandel, Nirupama, Ermel, Raili, Sukhavasi, Katyayani, Hao, Ke, Ruusalepp, Arno, Björkegren, Johan L.M., Kovacic, Jason C
Publicat a Atherosclerosis (2020)

Macrophage Trafficking, Inflammatory Resolution, and Genomics in Atherosclerosis: JACC Macrophage in CVD Series (Part II)

per Moore, Kathryn J., Koplev, Simon, Fisher, Edward A., Tabas, Ira, Björkegren, Johan L.M., Doran, Amanda C., Kovacic, Jason C
Publicat a J Am Coll Cardiol (2018)

Enabling Precision Cardiology Through Multiscale Biology and Systems Medicine

per Johnson, Kipp W., Shameer, Khader, Glicksberg, Benjamin S., Readhead, Ben, Sengupta, Partho P., Björkegren, Johan L.M., Kovacic, Jason C., Dudley, Joel T.
Publicat a JACC Basic Transl Sci (2017)

Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans

per Codoni, Veronica, Blum, Yuna, Civelek, Mete, Proust, Carole, Franzén, Oscar, Björkegren, Johan L. M., Le Goff, Wilfried, Cambien, Francois, Lusis, Aldons J., Trégouët, David-Alexandre
Publicat a G3 (Bethesda) (2016)

EnsembleCNV: an ensemble machine learning algorithm to identify and genotype copy number variation using SNP array data

per Zhang, Zhongyang, Cheng, Haoxiang, Hong, Xiumei, Di Narzo, Antonio F, Franzen, Oscar, Peng, Shouneng, Ruusalepp, Arno, Kovacic, Jason C, Bjorkegren, Johan L M, Wang, Xiaobin, Hao, Ke
Publicat a Nucleic Acids Res (2019)

Large-Scale Identification of Common Trait and Disease Variants Affecting Gene Expression

per Hauberg, Mads Engel, Zhang, Wen, Giambartolomei, Claudia, Franzén, Oscar, Morris, David L., Vyse, Timothy J., Ruusalepp, Arno, Sklar, Pamela, Schadt, Eric E., Björkegren, Johan L.M., Roussos, Panos
Publicat a Am J Hum Genet (2017)

Large-Scale Identification of Common Trait and Disease Variants Affecting Gene Expression

per Hauberg, Mads Engel, Zhang, Wen, Giambartolomei, Claudia, Franzén, Oscar, Morris, David L., Vyse, Timothy J., Ruusalepp, Arno, Sklar, Pamela, Schadt, Eric E., Björkegren, Johan L.M., Roussos, Panos
Publicat a Am J Hum Genet (2017)

Integrative transcriptome imputation reveals tissue-specific and shared biological mechanisms mediating susceptibility to complex traits

per Zhang, Wen, Voloudakis, Georgios, Rajagopal, Veera M., Readhead, Ben, Dudley, Joel T., Schadt, Eric E., Björkegren, Johan L. M., Kim, Yungil, Fullard, John F., Hoffman, Gabriel E., Roussos, Panos
Publicat a Nat Commun (2019)

Global analysis of A-to-I RNA editing reveals association with common disease variants

per Franzén, Oscar, Ermel, Raili, Sukhavasi, Katyayani, Jain, Rajeev, Jain, Anamika, Betsholtz, Christer, Giannarelli, Chiara, Kovacic, Jason C., Ruusalepp, Arno, Skogsberg, Josefin, Hao, Ke, Schadt, Eric E., Björkegren, Johan L.M.
Publicat a PeerJ (2018)

Genetic regulation of the placental transcriptome underlies birth weight and risk of childhood obesity

per Peng, Shouneng, Deyssenroth, Maya A., Di Narzo, Antonio F., Cheng, Haoxiang, Zhang, Zhongyang, Lambertini, Luca, Ruusalepp, Arno, Kovacic, Jason C., Bjorkegren, Johan L. M., Marsit, Carmen J., Chen, Jia, Hao, Ke
Publicat a PLoS Genet (2018)

OR09-04 Common Genetic Variants Associated with SERPINA6 Expression in Liver Influence Cortisol-Responsive Transcriptional Networks in Human Adipose Tissue

per Bankier, Sean A, Crawford, Andrew A, Wang, Lingfei, Sukhavasi, Katyayani, Ermel, Raili, Andrew, Ruth, Ruusalepp, Arno, Timpson, Nicolas J, Smith, George Davey, Bjorkegren, Johan L M, Walker, Brian R, Michoel, Tom
Publicat a J Endocr Soc (2020)

Sex differences in human adipose tissue gene expression and genetic regulation involve adipogenesis

per Anderson, Warren D., Soh, Joon Yuhl, Innis, Sarah E., Dimanche, Alexis, Ma, Lijiang, Langefeld, Carl D., Comeau, Mary E., Das, Swapan K., Schadt, Eric E., Björkegren, Johan L.M., Civelek, Mete
Publicat a Genome Res (2020)

Plasma Cholesterol–Induced Lesion Networks Activated before Regression of Early, Mature, and Advanced Atherosclerosis

per Björkegren, Johan L. M., Hägg, Sara, Talukdar, Husain A., Foroughi Asl, Hassan, Jain, Rajeev K., Cedergren, Cecilia, Shang, Ming-Mei, Rossignoli, Aránzazu, Takolander, Rabbe, Melander, Olle, Hamsten, Anders, Michoel, Tom, Skogsberg, Josefin
Publicat 2014

Contribution of Regulatory-Gene Networks to Heritability of Coronary Artery Disease

per Zeng, Lingyao, Talukdar, Husain, Koplev, Simon, Giannarelli, Chiara, Ivert, Torbjörn, Gan, Li-Ming, Ruusalepp, Arno, Schadt, Eric E, Kovacic, Jason C., Lusis, Aldons J., Michoel, Tom, Schunkert, Heribert, Björkegren, Johan L.M.
Publicat a J Am Coll Cardiol (2019)

Sex-stratified gene regulatory networks reveal female key-driver genes of atherosclerosis involved in smooth muscle cell phenotype switching

per Hartman, Robin J.G., Owsiany, Katie, Ma, Lijiang, Koplev, Simon, Hao, Ke, Slenders, Lotte, Civelek, Mete, Mokry, Michal, Kovacic, Jason C., Pasterkamp, Gerard, Owens, Gary, Björkegren, Johan L.M., den Ruijter, Hester M.
Publicat a Circulation (2021)

Systematic analysis of chromatin interactions at disease associated loci links novel candidate genes to inflammatory bowel disease

per Meddens, Claartje A., Harakalova, Magdalena, van den Dungen, Noortje A. M., Foroughi Asl, Hassan, Hijma, Hemme J., Cuppen, Edwin P. J. G., Björkegren, Johan L. M., Asselbergs, Folkert W., Nieuwenhuis, Edward E. S., Mokry, Michal
Publicat a Genome Biol (2016)