SICTIN: Rapid footprinting of massively parallel sequencing data

Autor Enroth, Stefan, Andersson, Robin, Wadelius, Claes, Komorowski, Jan
Vydáno 2010

Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions

Autor Rennie, Sarah, Dalby, Maria, van Duin, Lucas, Andersson, Robin
Vydáno v Nat Commun (2018)

Nucleosomes are well positioned in exons and carry characteristic histone modifications

Autor Andersson, Robin, Enroth, Stefan, Rada-Iglesias, Alvaro, Wadelius, Claes, Komorowski, Jan
Vydáno 2009

CAGEfightR: analysis of 5′-end data using R/Bioconductor

Autor Thodberg, Malte, Thieffry, Axel, Vitting-Seerup, Kristoffer, Andersson, Robin, Sandelin, Albin
Vydáno v BMC Bioinformatics (2019)

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts

Autor Björkholm, Patrik, Daniluk, Pawel, Kryshtafovych, Andriy, Fidelis, Krzysztof, Andersson, Robin, Hvidsten, Torgeir R.
Vydáno 2009

Human gene promoters are intrinsically bidirectional

Autor Andersson, Robin, Chen, Yun, Core, Leighton, Lis, John, Sandelin, Albin, Jensen, Torben Heick
Vydáno v Mol Cell (2015)

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements

Autor Enroth Stefan, Andersson Claes R, Andersson Robin, Wadelius Claes, Gustafsson Mats G, Komorowski Jan
Vydáno 2012-01-01

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements

Autor Enroth, Stefan, Andersson, Claes R, Andersson, Robin, Wadelius, Claes, Gustafsson, Mats G, Komorowski, Jan
Vydáno 2012

Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa

Autor Enroth, Stefan, Rada-Iglesisas, Alvaro, Andersson, Robin, Wallerman, Ola, Wanders, Alkwin, Påhlman, Lars, Komorowski, Jan, Wadelius, Claes
Vydáno 2011

Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities

Autor Rennie, Sarah, Dalby, Maria, Lloret-Llinares, Marta, Bakoulis, Stylianos, Dalager Vaagensø, Christian, Heick Jensen, Torben, Andersson, Robin
Vydáno v Nucleic Acids Res (2018)

Integrative epigenomic and genomic analysis of malignant pheochromocytoma

Autor Sandgren, Johanna, Andersson, Robin, Rada-Iglesias, Alvaro, Enroth, Stefan, Åkerström, Göran, Dumanski, Jan P., Komorowski, Jan, Westin, Gunnar, Wadelius, Claes
Vydáno 2010

Regulating retrotransposon activity through the use of alternative transcription start sites

Autor Persson, Jenna, Steglich, Babett, Smialowska, Agata, Boyd, Mette, Bornholdt, Jette, Andersson, Robin, Schurra, Catherine, Arcangioli, Benoit, Sandelin, Albin, Nielsen, Olaf, Ekwall, Karl
Vydáno v EMBO Rep (2016)

Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors

Autor Lennartsson, Andreas, Arner, Erik, Fagiolini, Michela, Saxena, Alka, Andersson, Robin, Takahashi, Hazuki, Noro, Yukihiko, Sng, Judy, Sandelin, Albin, Hensch, Takao K., Carninci, Piero
Vydáno v Epigenetics Chromatin (2015)

The frequent evolutionary birth and death of functional promoters in mouse and human

Autor Young, Robert S., Hayashizaki, Yoshihide, Andersson, Robin, Sandelin, Albin, Kawaji, Hideya, Itoh, Masayoshi, Lassmann, Timo, Carninci, Piero, Bickmore, Wendy A., Forrest, Alistair R., Taylor, Martin S.
Vydáno v Genome Res (2015)

The RNA exosome contributes to gene expression regulation during stem cell differentiation

Autor Lloret-Llinares, Marta, Karadoulama, Evdoxia, Chen, Yun, Wojenski, Luke A, Villafano, Geno J, Bornholdt, Jette, Andersson, Robin, Core, Leighton, Sandelin, Albin, Jensen, Torben Heick
Vydáno v Nucleic Acids Res (2018)

PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells

Autor Agrawal Singh, Shuchi, Lerdrup, Mads, Gomes, Ana-Luisa R, van de Werken, Harmen JG, Vilstrup Johansen, Jens, Andersson, Robin, Sandelin, Albin, Helin, Kristian, Hansen, Klaus
Vydáno v eLife (2019)

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions

Autor Davis, Margaret R., Andersson, Robin, Severin, Jessica, de Hoon, Michiel, Bertin, Nicolas, Baillie, J. Kenneth, Kawaji, Hideya, Sandelin, Albin, Forrest, Alistair R.R., Summers, Kim M.
Vydáno 2014

Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters

Autor Chen, Yun, Pai, Athma A., Herudek, Jan, Lubas, Michal, Meola, Nicola, Järvelin, Aino I., Andersson, Robin, Pelechano, Vicent, Steinmetz, Lars M., Heick Jensen, Torben, Sandelin, Albin
Vydáno v Nat Genet (2016)

Nucleosome regulatory dynamics in response to TGFβ

Autor Enroth, Stefan, Andersson, Robin, Bysani, Madhusudhan, Wallerman, Ola, Termén, Stefan, Tuch, Brian B., De La Vega, Francisco M., Heldin, Carl-Henrik, Moustakas, Aristidis, Komorowski, Jan, Wadelius, Claes
Vydáno 2014

The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1

Autor Gažová, Iveta, Lefevre, Lucas, Bush, Stephen J., Clohisey, Sara, Arner, Erik, de Hoon, Michiel, Severin, Jessica, van Duin, Lucas, Andersson, Robin, Lengeling, Andreas, Hume, David A., Summers, Kim M.
Vydáno v Front Cell Dev Biol (2020)