SICTIN: Rapid footprinting of massively parallel sequencing data

by Enroth, Stefan, Andersson, Robin, Wadelius, Claes, Komorowski, Jan
Published 2010

Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions

by Rennie, Sarah, Dalby, Maria, van Duin, Lucas, Andersson, Robin
Published in Nat Commun (2018)

Nucleosomes are well positioned in exons and carry characteristic histone modifications

by Andersson, Robin, Enroth, Stefan, Rada-Iglesias, Alvaro, Wadelius, Claes, Komorowski, Jan
Published 2009

CAGEfightR: analysis of 5′-end data using R/Bioconductor

by Thodberg, Malte, Thieffry, Axel, Vitting-Seerup, Kristoffer, Andersson, Robin, Sandelin, Albin
Published in BMC Bioinformatics (2019)

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts

by Björkholm, Patrik, Daniluk, Pawel, Kryshtafovych, Andriy, Fidelis, Krzysztof, Andersson, Robin, Hvidsten, Torgeir R.
Published 2009

Human gene promoters are intrinsically bidirectional

by Andersson, Robin, Chen, Yun, Core, Leighton, Lis, John, Sandelin, Albin, Jensen, Torben Heick
Published in Mol Cell (2015)

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements

by Enroth Stefan, Andersson Claes R, Andersson Robin, Wadelius Claes, Gustafsson Mats G, Komorowski Jan
Published 2012-01-01

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements

by Enroth, Stefan, Andersson, Claes R, Andersson, Robin, Wadelius, Claes, Gustafsson, Mats G, Komorowski, Jan
Published 2012

Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa

by Enroth, Stefan, Rada-Iglesisas, Alvaro, Andersson, Robin, Wallerman, Ola, Wanders, Alkwin, Påhlman, Lars, Komorowski, Jan, Wadelius, Claes
Published 2011

Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities

by Rennie, Sarah, Dalby, Maria, Lloret-Llinares, Marta, Bakoulis, Stylianos, Dalager Vaagensø, Christian, Heick Jensen, Torben, Andersson, Robin
Published in Nucleic Acids Res (2018)

Integrative epigenomic and genomic analysis of malignant pheochromocytoma

by Sandgren, Johanna, Andersson, Robin, Rada-Iglesias, Alvaro, Enroth, Stefan, Åkerström, Göran, Dumanski, Jan P., Komorowski, Jan, Westin, Gunnar, Wadelius, Claes
Published 2010

Regulating retrotransposon activity through the use of alternative transcription start sites

by Persson, Jenna, Steglich, Babett, Smialowska, Agata, Boyd, Mette, Bornholdt, Jette, Andersson, Robin, Schurra, Catherine, Arcangioli, Benoit, Sandelin, Albin, Nielsen, Olaf, Ekwall, Karl
Published in EMBO Rep (2016)

Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors

by Lennartsson, Andreas, Arner, Erik, Fagiolini, Michela, Saxena, Alka, Andersson, Robin, Takahashi, Hazuki, Noro, Yukihiko, Sng, Judy, Sandelin, Albin, Hensch, Takao K., Carninci, Piero
Published in Epigenetics Chromatin (2015)

The frequent evolutionary birth and death of functional promoters in mouse and human

by Young, Robert S., Hayashizaki, Yoshihide, Andersson, Robin, Sandelin, Albin, Kawaji, Hideya, Itoh, Masayoshi, Lassmann, Timo, Carninci, Piero, Bickmore, Wendy A., Forrest, Alistair R., Taylor, Martin S.
Published in Genome Res (2015)

The RNA exosome contributes to gene expression regulation during stem cell differentiation

by Lloret-Llinares, Marta, Karadoulama, Evdoxia, Chen, Yun, Wojenski, Luke A, Villafano, Geno J, Bornholdt, Jette, Andersson, Robin, Core, Leighton, Sandelin, Albin, Jensen, Torben Heick
Published in Nucleic Acids Res (2018)

PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells

by Agrawal Singh, Shuchi, Lerdrup, Mads, Gomes, Ana-Luisa R, van de Werken, Harmen JG, Vilstrup Johansen, Jens, Andersson, Robin, Sandelin, Albin, Helin, Kristian, Hansen, Klaus
Published in eLife (2019)

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions

by Davis, Margaret R., Andersson, Robin, Severin, Jessica, de Hoon, Michiel, Bertin, Nicolas, Baillie, J. Kenneth, Kawaji, Hideya, Sandelin, Albin, Forrest, Alistair R.R., Summers, Kim M.
Published 2014

Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters

by Chen, Yun, Pai, Athma A., Herudek, Jan, Lubas, Michal, Meola, Nicola, Järvelin, Aino I., Andersson, Robin, Pelechano, Vicent, Steinmetz, Lars M., Heick Jensen, Torben, Sandelin, Albin
Published in Nat Genet (2016)

Nucleosome regulatory dynamics in response to TGFβ

by Enroth, Stefan, Andersson, Robin, Bysani, Madhusudhan, Wallerman, Ola, Termén, Stefan, Tuch, Brian B., De La Vega, Francisco M., Heldin, Carl-Henrik, Moustakas, Aristidis, Komorowski, Jan, Wadelius, Claes
Published 2014

The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1

by Gažová, Iveta, Lefevre, Lucas, Bush, Stephen J., Clohisey, Sara, Arner, Erik, de Hoon, Michiel, Severin, Jessica, van Duin, Lucas, Andersson, Robin, Lengeling, Andreas, Hume, David A., Summers, Kim M.
Published in Front Cell Dev Biol (2020)