RmSAT-CFAR: Fast and accurate target detection in radar images

Por Fatih Nar, Osman Erman Okman, Atilla Özgür, Müjdat Çetin
Publicado em 2018-07-01

Topological constraints strongly affect chromatin reconstitution in silico

Por Brackley, C.A., Allan, J., Keszenman-Pereyra, D., Marenduzzo, D.
Publicado no Nucleic Acids Res (2015)

Effects of genetic variations on microRNA: target interactions

Por Liu, Chaochun, Rennie, William A., Carmack, C. Steven, Kanoria, Shaveta, Cheng, Jijun, Lu, Jun, Ding, Ye
Publicado em 2014

Sparse expression bases in cancer reveal tumor drivers

Por Logsdon, Benjamin A., Gentles, Andrew J., Miller, Chris P., Blau, C. Anthony, Becker, Pamela S., Lee, Su-In
Publicado no Nucleic Acids Res (2015)

An implementation of the Gillespie algorithm for RNA kinetics with logarithmic time update

Por Dykeman, Eric C.
Publicado no Nucleic Acids Res (2015)

Quality measures for protein alignment benchmarks

Por Edgar, Robert C.
Publicado em 2010

Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation

Por Zhang, Yu, Hardison, Ross C.
Publicado no Nucleic Acids Res (2017)

A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case

Por Yu, G.X., Snyder, E.E., Boyle, S.M., Crasta, O.R., Czar, M., Mane, S.P., Purkayastha, A., Sobral, B., Setubal, J.C.
Publicado em 2007

Improved search heuristics find 20 000 new alignments between human and mouse genomes

Por Frith, Martin C., Noé, Laurent
Publicado em 2014

Transcript level and sequence determinants of protein abundance and noise in Escherichia coli

Por Guimaraes, Joao C., Rocha, Miguel, Arkin, Adam P.
Publicado em 2014

miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data

Por An, Jiyuan, Lai, John, Lehman, Melanie L., Nelson, Colleen C.
Publicado em 2013

Scalable web services for the PSIPRED Protein Analysis Workbench

Por Buchan, Daniel W. A., Minneci, Federico, Nugent, Tim C. O., Bryson, Kevin, Jones, David T.
Publicado em 2013

The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification

Por Majorek, Karolina A., Dunin-Horkawicz, Stanislaw, Steczkiewicz, Kamil, Muszewska, Anna, Nowotny, Marcin, Ginalski, Krzysztof, Bujnicki, Janusz M.
Publicado em 2014

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Por Edgar, Robert C.
Publicado em 2004

The mechanism of ϕC31 integrase directionality: experimental analysis and computational modelling

Por Pokhilko, Alexandra, Zhao, Jia, Ebenhöh, Oliver, Smith, Margaret C. M., Stark, W. Marshall, Colloms, Sean D.
Publicado no Nucleic Acids Res (2016)

Microbial species delineation using whole genome sequences

Por Varghese, Neha J., Mukherjee, Supratim, Ivanova, Natalia, Konstantinidis, Konstantinos T., Mavrommatis, Kostas, Kyrpides, Nikos C., Pati, Amrita
Publicado no Nucleic Acids Res (2015)

Developments in CORG: a gene-centric comparative genomics resource

Por Dieterich, C., Franz, M. W., Vingron, M.
Publicado em 2007

A new reference implementation of the PSICQUIC web service

Por del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Jimenez, Rafael C., Galeota, Eugenia, Launay, Guillaume, Goll, Johannes, Breuer, Karin, Ono, Keiichiro, Salwinski, Lukasz, Hermjakob, Henning
Publicado em 2013

LLM3D: a log-linear modeling-based method to predict functional gene regulatory interactions from genome-wide expression data

Por Geeven, Geert, MacGillavry, Harold D., Eggers, Ruben, Sassen, Marion M., Verhaagen, Joost, Smit, August B., de Gunst, Mathisca C. M., van Kesteren, Ronald E.
Publicado em 2011

Flexible expressed region analysis for RNA-seq with derfinder

Por Collado-Torres, Leonardo, Nellore, Abhinav, Frazee, Alyssa C., Wilks, Christopher, Love, Michael I., Langmead, Ben, Irizarry, Rafael A., Leek, Jeffrey T., Jaffe, Andrew E.
Publicado no Nucleic Acids Res (2017)