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An implementation of the Gillespie algorithm for RNA kinetics with logarithmic time update
In this paper I outline a fast method called KFOLD for implementing the Gillepie algorithm to stochastically sample the folding kinetics of an RNA molecule at single base-pair resolution. In the same fashion as the KINFOLD algorithm, which also uses the Gillespie algorithm to predict folding kinetic...
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| Pubblicato in: | Nucleic Acids Res |
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| Autore principale: | |
| Natura: | Artigo |
| Lingua: | Inglês |
| Pubblicazione: |
Oxford University Press
2015
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| Soggetti: | |
| Accesso online: | https://ncbi.nlm.nih.gov/pmc/articles/PMC4499123/ https://ncbi.nlm.nih.gov/pubmed/25990741 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkv480 |
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