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Absolute protein binding free energy simulations for ligands with multiple poses, a thermodynamic path which avoids exhaustive enumeration of the poses

We propose a free energy calculation method for receptor-ligand binding, which have multiple binding poses that avoids exhaustive enumeration of the poses. For systems with multiple binding poses, the standard procedure is to enumerate orientations of the binding poses, restrain the ligand to each o...

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Vydáno v:J Comput Chem
Hlavní autoři: Sakae, Yoshitake, Zhang, Bin W., Levy, Ronald M., Deng, Nanjie
Médium: Artigo
Jazyk:Inglês
Vydáno: 2019
Témata:
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC7140983/
https://ncbi.nlm.nih.gov/pubmed/31621932
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/jcc.26078
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