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Computing Conformational Free Energy Differences in Explicit Solvent: An Efficient Thermodynamic Cycle using an Auxiliary Potential and a Free Energy Functional Constructed from the End Points

Many biomolecules undergo conformational changes associated with allostery or ligand binding. Observing these changes in computer simulations is difficult if their timescales are long. These calculations can be accelerated by observing the transition on an auxiliary free energy surface with a simple...

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Bibliografski detalji
Izdano u:J Comput Chem
Glavni autori: Harris, Robert C., Deng, Nanjie, Levy, Ronald M., Ishizuka, Ryosuke, Matubayasi, Nobuyuki
Format: Artigo
Jezik:Inglês
Izdano: 2016
Teme:
Online pristup:https://ncbi.nlm.nih.gov/pmc/articles/PMC5403615/
https://ncbi.nlm.nih.gov/pubmed/28008630
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/jcc.24668
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