Recollection

Por Levy, Ronald M.
Publicado no Protein Sci (2015)

Advances in all atom sampling methods for modeling protein-ligand binding affinities

Por Gallicchio, Emilio, Levy, Ronald M.
Publicado em 2011

Recent Theoretical and Computational Advances for Modeling Protein-Ligand Binding Affinities

Por Gallicchio, Emilio, Levy, Ronald M.
Publicado em 2011

Prediction of SAMPL3 Host-Guest Affinities with the Binding Energy Distribution Analysis Method (BEDAM)

Por Gallicchio, Emilio, Levy, Ronald M.
Publicado em 2012

Molecular Dynamics of the Proline Switch and Its Role in Crk Signaling

Por Xia, Junchao, Levy, Ronald M.
Publicado em 2014

Molecular dynamics of an α-helical polypeptide: Temperature dependence and deviation from harmonic behavior

Por Levy, Ronald M., Perahia, David, Karplus, Martin
Publicado em 1982

Direct Determination of Kinetic Rates from Single-Molecule Photon Arrival Trajectories Using Hidden Markov Models

Por Andrec, Michael, Levy, Ronald M., Talaga, David S.
Publicado em 2003

Conformational populations of ligand-sized molecules by replica exchange molecular dynamics and temperature reweighting

Por Okumura, Hisashi, Gallicchio, Emilio, Levy, Ronald M.
Publicado em 2010

The AGBNP2 Implicit Solvation Model

Por Gallicchio, Emilio, Paris, Kristina, Levy, Ronald M.
Publicado em 2009

Asynchronous Replica Exchange for Molecular Simulations

Por Gallicchio, Emilio, Levy, Ronald M., Parashar, Manish
Publicado em 2008

The Binding Energy Distribution Analysis Method (BEDAM) for the Estimation of Protein-Ligand Binding Affinities

Por Gallicchio, Emilio, Lapelosa, Mauro, Levy, Ronald M.
Publicado em 2010

The Linear Interaction Energy Method for the Prediction of Protein Stability Changes Upon Mutation

Por Wickstrom, Lauren, Gallicchio, Emilio, Levy, Ronald M.
Publicado em 2011

Conformational Transitions and Convergence of Absolute Binding Free Energy Calculations

Por Lapelosa, Mauro, Gallicchio, Emilio, Levy, Ronald M.
Publicado em 2012

Normal mode paths for hydrogen exchange in the peptide ferrichrome

Por Sheridan, Robert P., Levy, Ronald M., Englander, S. W.
Publicado em 1983

NMR Relaxation in Proteins with Fast Internal Motions and Slow Conformational Exchange: Model Free Framework and Markov State Simulations

Por Xia, Junchao, Deng, Nan-jie, Levy, Ronald M.
Publicado em 2013

How Kinetics within the Unfolded State Affects Protein Folding: an Analysis Based on Markov State Models and an Ultra-Long MD Trajectory

Por Deng, Nan-jie, Dai, Wei, Levy, Ronald M.
Publicado em 2013

Connecting Free Energy Surfaces in Implicit and Explicit Solvent: an Efficient Method to Compute Conformational and Solvation Free Energies

Por Deng, Nanjie, Zhang, Bin W., Levy, Ronald M.
Publicado no J Chem Theory Comput (2015)

First Passage Times, Lifetimes, and Relaxation Times of Unfolded Proteins

Por Dai, Wei, Sengupta, Anirvan M., Levy, Ronald M.
Publicado no Phys Rev Lett (2015)

MOLECULAR DYNAMICS STUDIES OF NMR RELAXATION IN PROTEINS

Por Levy, Ronald M., Karplus, Martin, McCammon, J. Andrew
Publicado em 1980

Simulating replica exchange simulations of protein folding with a kinetic network model

Por Zheng, Weihua, Andrec, Michael, Gallicchio, Emilio, Levy, Ronald M.
Publicado em 2007