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Absolute protein binding free energy simulations for ligands with multiple poses, a thermodynamic path which avoids exhaustive enumeration of the poses

We propose a free energy calculation method for receptor-ligand binding, which have multiple binding poses that avoids exhaustive enumeration of the poses. For systems with multiple binding poses, the standard procedure is to enumerate orientations of the binding poses, restrain the ligand to each o...

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Bibliographic Details
Published in:J Comput Chem
Main Authors: Sakae, Yoshitake, Zhang, Bin W., Levy, Ronald M., Deng, Nanjie
Format: Artigo
Language:Inglês
Published: 2019
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC7140983/
https://ncbi.nlm.nih.gov/pubmed/31621932
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/jcc.26078
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