Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences

di de Filippo, Cesare, Meyer, Matthias, Prüfer, Kay
Pubblicato in BMC Biol (2018)

Bringing together linguistic and genetic evidence to test the Bantu expansion

di de Filippo, Cesare, Bostoen, Koen, Stoneking, Mark, Pakendorf, Brigitte
Pubblicazione 2012

A Novel Candidate Region for Genetic Adaptation to High Altitude in Andean Populations

di Valverde, Guido, Zhou, Hang, Lippold, Sebastian, de Filippo, Cesare, Tang, Kun, López Herráez, David, Li, Jing, Stoneking, Mark
Pubblicato in PLoS One (2015)

Signatures of Long-Term Balancing Selection in Human Genomes

di Bitarello, Bárbara D, de Filippo, Cesare, Teixeira, João C, Schmidt, Joshua M, Kleinert, Philip, Meyer, Diogo, Andrés, Aida M
Pubblicato in Genome Biol Evol (2018)

Recent Selection Changes in Human Genes under Long-Term Balancing Selection

di de Filippo, Cesare, Key, Felix M., Ghirotto, Silvia, Benazzo, Andrea, Meneu, Juan R., Weihmann, Antje, Parra, Genís, Green, Eric D., Andrés, Aida M.
Pubblicato in Mol Biol Evol (2016)

Y-chromosomal variation in Sub-Saharan Africa: insights into the history of Niger-Congo groups

di de Filippo, Cesare, Barbieri, Chiara, Whitten, Mark, Mpoloka, Sununguko Wata, Gunnarsdóttir, Ellen Drofn, Bostoen, Koen, Nyambe, Terry, Beyer, Klaus, Schreiber, Henning, de Knijff, Peter, Luiselli, Donata, Stoneking, Mark, Pakendorf, Brigitte
Pubblicazione 2010

The impact of endogenous content, replicates and pooling on genome capture from faecal samples

di Hernandez‐Rodriguez, Jessica, Arandjelovic, Mimi, Lester, Jack, de Filippo, Cesare, Weihmann, Antje, Meyer, Matthias, Angedakin, Samuel, Casals, Ferran, Navarro, Arcadi, Vigilant, Linda, Kühl, Hjalmar S., Langergraber, Kevin, Boesch, Christophe, Hughes, David, Marques‐Bonet, Tomas
Pubblicato in Mol Ecol Resour (2017)

A genetic analysis of the Gibraltar Neanderthals

di Bokelmann, Lukas, Hajdinjak, Mateja, Peyrégne, Stéphane, Brace, Selina, Essel, Elena, de Filippo, Cesare, Glocke, Isabelle, Grote, Steffi, Mafessoni, Fabrizio, Nagel, Sarah, Kelso, Janet, Prüfer, Kay, Vernot, Benjamin, Barnes, Ian, Pääbo, Svante, Meyer, Matthias, Stringer, Chris
Pubblicato in Proc Natl Acad Sci U S A (2019)

A high-coverage Neandertal genome from Chagyrskaya Cave

di Mafessoni, Fabrizio, Grote, Steffi, de Filippo, Cesare, Slon, Viviane, Kolobova, Kseniya A., Viola, Bence, Markin, Sergey V., Chintalapati, Manjusha, Peyrégne, Stephane, Skov, Laurits, Skoglund, Pontus, Krivoshapkin, Andrey I., Derevianko, Anatoly P., Meyer, Matthias, Kelso, Janet, Peter, Benjamin, Prüfer, Kay, Pääbo, Svante
Pubblicato in Proc Natl Acad Sci U S A (2020)

The genome of the offspring of a Neandertal mother and a Denisovan father

di Slon, Viviane, Mafessoni, Fabrizio, Vernot, Benjamin, de Filippo, Cesare, Grote, Steffi, Viola, Bence, Hajdinjak, Mateja, Peyrégne, Stéphane, Nagel, Sarah, Brown, Samantha, Douka, Katerina, Higham, Tom, Kozlikin, Maxim B., Shunkov, Michael V., Derevianko, Anatoly P., Kelso, Janet, Meyer, Matthias, Prüfer, Kay, Pääbo, Svante
Pubblicato in Nature (2018)

Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe

di Peyrégne, Stéphane, Slon, Viviane, Mafessoni, Fabrizio, de Filippo, Cesare, Hajdinjak, Mateja, Nagel, Sarah, Nickel, Birgit, Essel, Elena, Le Cabec, Adeline, Wehrberger, Kurt, Conard, Nicholas J., Kind, Claus Joachim, Posth, Cosimo, Krause, Johannes, Abrams, Grégory, Bonjean, Dominique, Di Modica, Kévin, Toussaint, Michel, Kelso, Janet, Meyer, Matthias, Pääbo, Svante, Prüfer, Kay
Pubblicato in Sci Adv (2019)

Ancient gene flow from early modern humans into Eastern Neanderthals

di Kuhlwilm, Martin, Gronau, Ilan, Hubisz, Melissa J., de Filippo, Cesare, Prado-Martinez, Javier, Kircher, Martin, Fu, Qiaomei, Burbano, Hernán A., Lalueza-Fox, Carles, de la Rasilla, Marco, Rosas, Antonio, Rudan, Pavao, Brajkovic, Dejana, Kucan, Željko, Gušic, Ivan, Marques-Bonet, Tomas, Andrés, Aida M., Viola, Bence, Pääbo, Svante, Meyer, Matthias, Siepel, Adam, Castellano, Sergi
Pubblicato in Nature (2016)

The genome sequence of a 45,000-year-old modern human from western Siberia

di Fu, Qiaomei, Li, Heng, Moorjani, Priya, Jay, Flora, Slepchenko, Sergey M., Bondarev, Aleksei A., Johnson, Philip L.F., Petri, Ayinuer A., Prüfer, Kay, de Filippo, Cesare, Meyer, Matthias, Zwyns, Nicolas, Salazar-Garcia, Domingo C., Kuzmin, Yaroslav V., Keates, Susan G., Kosintsev, Pavel A., Razhev, Dmitry I., Richards, Michael P., Peristov, Nikolai V., Lachmann, Michael, Douka, Katerina, Higham, Thomas F.G., Slatkin, Montgomery, Hublin, Jean-Jacques, Reich, David, Kelso, Janet, Viola, T. Bence, Pääbo, Svante
Pubblicato in Nature (2014)

A HIGH COVERAGE GENOME SEQUENCE FROM AN ARCHAIC DENISOVAN INDIVIDUAL

di Meyer, Matthias, Kircher, Martin, Gansauge, Marie-Theres, Li, Heng, Racimo, Fernando, Mallick, Swapan, Schraiber, Joshua G., Jay, Flora, Prüfer, Kay, de Filippo, Cesare, Sudmant, Peter H., Alkan, Can, Fu, Qiaomei, Do, Ron, Rohland, Nadin, Tandon, Arti, Siebauer, Michael, Green, Richard E., Bryc, Katarzyna, Briggs, Adrian W., Stenzel, Udo, Dabney, Jesse, Shendure, Jay, Kitzman, Jacob, Hammer, Michael F., Shunkov, Michael V., Derevianko, Anatoli P., Patterson, Nick, Andrés, Aida M., Eichler, Evan E., Slatkin, Montgomery, Reich, David, Kelso, Janet, Pääbo, Svante
Pubblicazione 2012

A high-coverage Neandertal genome from Vindija Cave in Croatia

di Prüfer, Kay, de Filippo, Cesare, Grote, Steffi, Mafessoni, Fabrizio, Korlević, Petra, Hajdinjak, Mateja, Vernot, Benjamin, Skov, Laurits, Hsieh, Pinghsun, Peyrégne, Stéphane, Reher, David, Hopfe, Charlotte, Nagel, Sarah, Maricic, Tomislav, Fu, Qiaomei, Theunert, Christoph, Rogers, Rebekah, Skoglund, Pontus, Chintalapati, Manjusha, Dannemann, Michael, Nelson, Bradley J., Key, Felix M., Rudan, Pavao, Kućan, Željko, Gušić, Ivan, Golovanova, Liubov V., Doronichev, Vladimir B., Patterson, Nick, Reich, David, Eichler, Evan E., Slatkin, Montgomery, Schierup, Mikkel H., Andrés, Aida, Kelso, Janet, Meyer, Matthias, Pääbo, Svante
Pubblicato in Science (2017)

The complete genome sequence of a Neandertal from the Altai Mountains

di Prüfer, Kay, Racimo, Fernando, Patterson, Nick, Jay, Flora, Sankararaman, Sriram, Sawyer, Susanna, Heinze, Anja, Renaud, Gabriel, Sudmant, Peter H., de Filippo, Cesare, Li, Heng, Mallick, Swapan, Dannemann, Michael, Fu, Qiaomei, Kircher, Martin, Kuhlwilm, Martin, Lachmann, Michael, Meyer, Matthias, Ongyerth, Matthias, Siebauer, Michael, Theunert, Christoph, Tandon, Arti, Moorjani, Priya, Pickrell, Joseph, Mullikin, James C., Vohr, Samuel H., Green, Richard E., Hellmann, Ines, Johnson, Philip L. F., Blanche, Hélène, Cann, Howard, Kitzman, Jacob O., Shendure, Jay, Eichler, Evan E., Lein, Ed S., Bakken, Trygve E., Golovanova, Liubov V., Doronichev, Vladimir B., Shunkov, Michael V., Derevianko, Anatoli P., Viola, Bence, Slatkin, Montgomery, Reich, David, Kelso, Janet, Pääbo, Svante
Pubblicazione 2013

Ancient human genomes suggest three ancestral populations for present-day Europeans

di Lazaridis, Iosif, Patterson, Nick, Mittnik, Alissa, Renaud, Gabriel, Mallick, Swapan, Kirsanow, Karola, Sudmant, Peter H., Schraiber, Joshua G., Castellano, Sergi, Lipson, Mark, Berger, Bonnie, Economou, Christos, Bollongino, Ruth, Fu, Qiaomei, Bos, Kirsten I., Nordenfelt, Susanne, Li, Heng, de Filippo, Cesare, Prüfer, Kay, Sawyer, Susanna, Posth, Cosimo, Haak, Wolfgang, Hallgren, Fredrik, Fornander, Elin, Rohland, Nadin, Delsate, Dominique, Francken, Michael, Guinet, Jean-Michel, Wahl, Joachim, Ayodo, George, Babiker, Hamza A., Bailliet, Graciela, Balanovska, Elena, Balanovsky, Oleg, Barrantes, Ramiro, Bedoya, Gabriel, Ben-Ami, Haim, Bene, Judit, Berrada, Fouad, Bravi, Claudio M., Brisighelli, Francesca, Busby, George B. J., Cali, Francesco, Churnosov, Mikhail, Cole, David E. C., Corach, Daniel, Damba, Larissa, van Driem, George, Dryomov, Stanislav, Dugoujon, Jean-Michel, Fedorova, Sardana A., Romero, Irene Gallego, Gubina, Marina, Hammer, Michael, Henn, Brenna M., Hervig, Tor, Hodoglugil, Ugur, Jha, Aashish R., Karachanak-Yankova, Sena, Khusainova, Rita, Khusnutdinova, Elza, Kittles, Rick, Kivisild, Toomas, Klitz, William, Kučinskas, Vaidutis, Kushniarevich, Alena, Laredj, Leila, Litvinov, Sergey, Loukidis, Theologos, Mahley, Robert W., Melegh, Béla, Metspalu, Ene, Molina, Julio, Mountain, Joanna, Näkkäläjärvi, Klemetti, Nesheva, Desislava, Nyambo, Thomas, Osipova, Ludmila, Parik, Jüri, Platonov, Fedor, Posukh, Olga, Romano, Valentino, Rothhammer, Francisco, Rudan, Igor, Ruizbakiev, Ruslan, Sahakyan, Hovhannes, Sajantila, Antti, Salas, Antonio, Starikovskaya, Elena B., Tarekegn, Ayele, Toncheva, Draga, Turdikulova, Shahlo, Uktveryte, Ingrida, Utevska, Olga, Vasquez, René, Villena, Mercedes, Voevoda, Mikhail, Winkler, Cheryl, Yepiskoposyan, Levon, Zalloua, Pierre, Zemunik, Tatijana, Cooper, Alan, Capelli, Cristian, Thomas, Mark G., Ruiz-Linares, Andres, Tishkoff, Sarah A., Singh, Lalji, Thangaraj, Kumarasamy, Villems, Richard, Comas, David, Sukernik, Rem, Metspalu, Mait, Meyer, Matthias, Eichler, Evan E., Burger, Joachim, Slatkin, Montgomery, Pääbo, Svante, Kelso, Janet, Reich, David, Krause, Johannes
Pubblicazione 2014